Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5402 | 3' | -54.4 | NC_001798.1 | + | 27310 | 0.69 | 0.864555 |
Target: 5'- cGG-CGGGAUGGagggGagGGAGGGGGuGGCg -3' miRNA: 3'- -CCaGCUCUACCg---CagCCUCCUCU-UCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 28757 | 0.69 | 0.856952 |
Target: 5'- --aCGaAGAcGGCGgacccgCGGAGGAGGAGg -3' miRNA: 3'- ccaGC-UCUaCCGCa-----GCCUCCUCUUCg -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 101820 | 0.69 | 0.856952 |
Target: 5'- gGGUUGGGGUaagcucGCGgCGGGGG-GAGGCg -3' miRNA: 3'- -CCAGCUCUAc-----CGCaGCCUCCuCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 36275 | 0.69 | 0.856952 |
Target: 5'- --cCGGGGUgGGCGgCGGGGGGGGGuGCc -3' miRNA: 3'- ccaGCUCUA-CCGCaGCCUCCUCUU-CG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 32949 | 0.7 | 0.849148 |
Target: 5'- aGUgGGGGUGGgaGUgGGGGGGGggGa -3' miRNA: 3'- cCAgCUCUACCg-CAgCCUCCUCuuCg -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 51459 | 0.7 | 0.841149 |
Target: 5'- cGGUCGAGAUucucgcgggccGcGUGUCGGGcccGGAGcuGCa -3' miRNA: 3'- -CCAGCUCUA-----------C-CGCAGCCU---CCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 11326 | 0.7 | 0.841149 |
Target: 5'- uGGUCGuGGAcgacgacgaacGGCGUCGGgguuuGGGGGggGUg -3' miRNA: 3'- -CCAGC-UCUa----------CCGCAGCC-----UCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 22681 | 0.7 | 0.832961 |
Target: 5'- cGGUCG-GA-GGCGaugUCGGcGGAGcAGCg -3' miRNA: 3'- -CCAGCuCUaCCGC---AGCCuCCUCuUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 26900 | 0.7 | 0.824593 |
Target: 5'- gGGUCGGGcgGGCGggGGucGGGcGGGCg -3' miRNA: 3'- -CCAGCUCuaCCGCagCCucCUC-UUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 22754 | 0.7 | 0.81605 |
Target: 5'- aGGUCGcGAUGGCGgacgaGGAcGGGGGAcGUc -3' miRNA: 3'- -CCAGCuCUACCGCag---CCU-CCUCUU-CG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 146096 | 0.7 | 0.807343 |
Target: 5'- aGG-CGGGcgGGCGaaGGAaGGGGggGUg -3' miRNA: 3'- -CCaGCUCuaCCGCagCCU-CCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 9838 | 0.71 | 0.798478 |
Target: 5'- aGGUaGAGGccGGCGUgCuGGGGGGAGGCg -3' miRNA: 3'- -CCAgCUCUa-CCGCA-GcCUCCUCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 39447 | 0.71 | 0.798478 |
Target: 5'- gGGUCaGGGAcaGCGccaucagCGGAGGGGggGCc -3' miRNA: 3'- -CCAG-CUCUacCGCa------GCCUCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 15324 | 0.71 | 0.798478 |
Target: 5'- cGGcCGAGGgccccGGCGcgguagCGGGGGGcGAGGCg -3' miRNA: 3'- -CCaGCUCUa----CCGCa-----GCCUCCU-CUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 101853 | 0.71 | 0.789464 |
Target: 5'- gGGUCccGgcGGCGgCGGAGGGGGgugGGCg -3' miRNA: 3'- -CCAGcuCuaCCGCaGCCUCCUCU---UCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 90804 | 0.71 | 0.780309 |
Target: 5'- cGG-CGAcgcGAUGGCuUCGGGGGucagacccAGAAGCg -3' miRNA: 3'- -CCaGCU---CUACCGcAGCCUCC--------UCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 64346 | 0.71 | 0.771023 |
Target: 5'- uGGaCGAGAaGGCGgaccagggUGGAGGcgGGGAGCg -3' miRNA: 3'- -CCaGCUCUaCCGCa-------GCCUCC--UCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 51087 | 0.71 | 0.771023 |
Target: 5'- aGGUCGAGGc--CG-CGGGGGAGAuGGCg -3' miRNA: 3'- -CCAGCUCUaccGCaGCCUCCUCU-UCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 48571 | 0.71 | 0.761614 |
Target: 5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3' miRNA: 3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 48535 | 0.71 | 0.761614 |
Target: 5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3' miRNA: 3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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