miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 2516 0.66 0.951632
Target:  5'- cGGccgCGGcGgcGGCGUCGGcGGGgcgGGggGCg -3'
miRNA:   3'- -CCa--GCU-CuaCCGCAGCC-UCC---UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 2559 0.71 0.761614
Target:  5'- --gCGGGAggGGCGgccgCGGGGcGGGggGCg -3'
miRNA:   3'- ccaGCUCUa-CCGCa---GCCUC-CUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 4262 0.67 0.937464
Target:  5'- --aCGAGGaGGCGgaugcagacgaGGAGGAgGAGGCg -3'
miRNA:   3'- ccaGCUCUaCCGCag---------CCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 4393 0.72 0.70309
Target:  5'- uGGUgGuGGUGGUGUCGGcggggcgccGGGGGucGCg -3'
miRNA:   3'- -CCAgCuCUACCGCAGCC---------UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 5273 0.72 0.722932
Target:  5'- ---gGAGGaGGaCG-CGGAGGAGGAGCg -3'
miRNA:   3'- ccagCUCUaCC-GCaGCCUCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 7799 0.66 0.962796
Target:  5'- uGG-CGGGAgccaGG-GUCGGAcaGGAGgcGCa -3'
miRNA:   3'- -CCaGCUCUa---CCgCAGCCU--CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 8875 0.67 0.947459
Target:  5'- cGGaCGcGGAagGGCGcuggCGGAGGgcGGAGGCg -3'
miRNA:   3'- -CCaGC-UCUa-CCGCa---GCCUCC--UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 9720 0.74 0.642422
Target:  5'- gGGcUCGGGcUGGCGcUGGGGGAGguGCu -3'
miRNA:   3'- -CC-AGCUCuACCGCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 9838 0.71 0.798478
Target:  5'- aGGUaGAGGccGGCGUgCuGGGGGGAGGCg -3'
miRNA:   3'- -CCAgCUCUa-CCGCA-GcCUCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 10286 0.73 0.650567
Target:  5'- cGUCGGGggGGCGacggggggacgaCGGGGGGGggGUu -3'
miRNA:   3'- cCAGCUCuaCCGCa-----------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 10384 0.69 0.879133
Target:  5'- cGUCGGGGgucGGgGUCGGcacAGGGGcGGGCu -3'
miRNA:   3'- cCAGCUCUa--CCgCAGCC---UCCUC-UUCG- -5'
5402 3' -54.4 NC_001798.1 + 11326 0.7 0.841149
Target:  5'- uGGUCGuGGAcgacgacgaacGGCGUCGGgguuuGGGGGggGUg -3'
miRNA:   3'- -CCAGC-UCUa----------CCGCAGCC-----UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 12350 0.69 0.87195
Target:  5'- gGGUCGAGGUGGCuGUgGGcGcGGuGGCu -3'
miRNA:   3'- -CCAGCUCUACCG-CAgCCuCcUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 12554 0.68 0.921443
Target:  5'- uGGUgCGAGGgggGcGCGUCgucaucccggauguGGGGGAGAcguaGGCg -3'
miRNA:   3'- -CCA-GCUCUa--C-CGCAG--------------CCUCCUCU----UCG- -5'
5402 3' -54.4 NC_001798.1 + 14981 0.66 0.955576
Target:  5'- --gCGGGAgcuugGGCGg-GGGGGcGAGGCg -3'
miRNA:   3'- ccaGCUCUa----CCGCagCCUCCuCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 15324 0.71 0.798478
Target:  5'- cGGcCGAGGgccccGGCGcgguagCGGGGGGcGAGGCg -3'
miRNA:   3'- -CCaGCUCUa----CCGCa-----GCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 15489 0.66 0.955192
Target:  5'- gGGUCGuGGgggcUGGUGUggUGGGGGgcguuuucgcugcGGAGGCg -3'
miRNA:   3'- -CCAGCuCU----ACCGCA--GCCUCC-------------UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 15725 0.68 0.911692
Target:  5'- gGGUCGAcuGAgggugccaUGGCGgUGGccgacacaGGGAGggGCg -3'
miRNA:   3'- -CCAGCU--CU--------ACCGCaGCC--------UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 16063 0.69 0.864555
Target:  5'- aGGUCGcugggggcGGcgGGCGUCuguGGGGGcAGAcAGCg -3'
miRNA:   3'- -CCAGC--------UCuaCCGCAG---CCUCC-UCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 17964 0.67 0.947459
Target:  5'- -uUCGcAGGUccGGaCGUCGGGGGGGGcuGCg -3'
miRNA:   3'- ccAGC-UCUA--CC-GCAGCCUCCUCUu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.