miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 30019 0.67 0.933547
Target:  5'- --cUGGGggGGCGagGGAggcagGGAGGAGCc -3'
miRNA:   3'- ccaGCUCuaCCGCagCCU-----CCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 30929 0.68 0.911692
Target:  5'- cGGU-GAGGgcggcgGGgGUCGGGcGGGggGCg -3'
miRNA:   3'- -CCAgCUCUa-----CCgCAGCCUcCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 30966 0.8 0.330373
Target:  5'- gGGUCGGGcgGGgGUCGGGcGGGGGucgGGCg -3'
miRNA:   3'- -CCAGCUCuaCCgCAGCCU-CCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 30999 0.8 0.330373
Target:  5'- gGGUCGGGcgGGgGUCGGGcGGGGGucgGGCg -3'
miRNA:   3'- -CCAGCUCuaCCgCAGCCU-CCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 31032 0.8 0.330373
Target:  5'- gGGUCGGGcgGGgGUCGGGcGGGGGucgGGCg -3'
miRNA:   3'- -CCAGCUCuaCCgCAGCCU-CCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 31791 0.77 0.455341
Target:  5'- gGGUCGGGAgggccgGGCG-CGGAGG-GAGGa -3'
miRNA:   3'- -CCAGCUCUa-----CCGCaGCCUCCuCUUCg -5'
5402 3' -54.4 NC_001798.1 + 32949 0.7 0.849148
Target:  5'- aGUgGGGGUGGgaGUgGGGGGGGggGa -3'
miRNA:   3'- cCAgCUCUACCg-CAgCCUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 33149 0.68 0.903777
Target:  5'- gGGcCgGGGAUGGgGgggaagggaggaggaGGAGGGGggGCg -3'
miRNA:   3'- -CCaG-CUCUACCgCag-------------CCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 34606 0.66 0.959296
Target:  5'- uGGgacgCGGGcaaagGGCGgcggcggCGGGGGGGggGg -3'
miRNA:   3'- -CCa---GCUCua---CCGCa------GCCUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 34741 0.68 0.923093
Target:  5'- cGGgccCGGGAgcggGGCGgccCGGgaGGGAGAAGa -3'
miRNA:   3'- -CCa--GCUCUa---CCGCa--GCC--UCCUCUUCg -5'
5402 3' -54.4 NC_001798.1 + 35799 0.72 0.742464
Target:  5'- -uUCGucg-GGCGgCGGGGGGGggGCg -3'
miRNA:   3'- ccAGCucuaCCGCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 36275 0.69 0.856952
Target:  5'- --cCGGGGUgGGCGgCGGGGGGGGGuGCc -3'
miRNA:   3'- ccaGCUCUA-CCGCaGCCUCCUCUU-CG- -5'
5402 3' -54.4 NC_001798.1 + 36438 0.68 0.911692
Target:  5'- gGGUCGGGGUcgcGGCGgggaaGGAaGGAaagaccccgGAAGCg -3'
miRNA:   3'- -CCAGCUCUA---CCGCag---CCU-CCU---------CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 36831 0.67 0.942603
Target:  5'- uGGUCGGcGUGGgGacCGGcugugugguggguGGGGGAGGCa -3'
miRNA:   3'- -CCAGCUcUACCgCa-GCC-------------UCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 38342 0.75 0.591557
Target:  5'- aGGuUCGAGAggGGCGUCGuugucauguugcGAGGGGggGg -3'
miRNA:   3'- -CC-AGCUCUa-CCGCAGC------------CUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 39380 0.67 0.928438
Target:  5'- gGGUCGA--UGGUGUCGGcAGaGGgcGCc -3'
miRNA:   3'- -CCAGCUcuACCGCAGCC-UCcUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 39447 0.71 0.798478
Target:  5'- gGGUCaGGGAcaGCGccaucagCGGAGGGGggGCc -3'
miRNA:   3'- -CCAG-CUCUacCGCa------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 40124 0.69 0.87122
Target:  5'- aGGUCGccggggcugGGAUGGCGgguguccUCcGAGGGGgcGCg -3'
miRNA:   3'- -CCAGC---------UCUACCGC-------AGcCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 40484 0.67 0.944845
Target:  5'- aGUCG-GAcgagccugccugugcUGG-GcCGGGGGAGggGCa -3'
miRNA:   3'- cCAGCuCU---------------ACCgCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 41643 0.67 0.947459
Target:  5'- cGGUCGuGA-GGUGcUGGAGGG--AGCg -3'
miRNA:   3'- -CCAGCuCUaCCGCaGCCUCCUcuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.