miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 42603 0.69 0.879133
Target:  5'- aGGUCGAGGUacgcGGCcucGUCGuccGGGAGggGg -3'
miRNA:   3'- -CCAGCUCUA----CCG---CAGCc--UCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 43682 0.68 0.91751
Target:  5'- gGGUCGuGGGUGGUcaCGGcccGGAGAuGCg -3'
miRNA:   3'- -CCAGC-UCUACCGcaGCCu--CCUCUuCG- -5'
5402 3' -54.4 NC_001798.1 + 44843 0.66 0.955576
Target:  5'- cGGagGGGGUGGgGU-GGGGGA-AAGCc -3'
miRNA:   3'- -CCagCUCUACCgCAgCCUCCUcUUCG- -5'
5402 3' -54.4 NC_001798.1 + 45983 0.68 0.911692
Target:  5'- -cUCGuGGAUGuuGUCGGGGGGGAuccaggggagGGCg -3'
miRNA:   3'- ccAGC-UCUACcgCAGCCUCCUCU----------UCG- -5'
5402 3' -54.4 NC_001798.1 + 46518 0.66 0.955576
Target:  5'- -cUCGGcucGGUGaGgGUCGGGGGGGuGGCc -3'
miRNA:   3'- ccAGCU---CUAC-CgCAGCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 48535 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 48571 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 48607 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 49842 0.66 0.951632
Target:  5'- uGGUgCGaAGugcGGCGgCGGAGGAacccGggGCg -3'
miRNA:   3'- -CCA-GC-UCua-CCGCaGCCUCCU----CuuCG- -5'
5402 3' -54.4 NC_001798.1 + 51087 0.71 0.771023
Target:  5'- aGGUCGAGGc--CG-CGGGGGAGAuGGCg -3'
miRNA:   3'- -CCAGCUCUaccGCaGCCUCCUCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 51459 0.7 0.841149
Target:  5'- cGGUCGAGAUucucgcgggccGcGUGUCGGGcccGGAGcuGCa -3'
miRNA:   3'- -CCAGCUCUA-----------C-CGCAGCCU---CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 55462 0.75 0.591557
Target:  5'- uGGUCGguGGGUGGgGUgGGGGaagaaGAGAGGCg -3'
miRNA:   3'- -CCAGC--UCUACCgCAgCCUC-----CUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 56195 0.66 0.966081
Target:  5'- gGGUgGGGuGUGGUGgguaCGGGGGAcgGAAGg -3'
miRNA:   3'- -CCAgCUC-UACCGCa---GCCUCCU--CUUCg -5'
5402 3' -54.4 NC_001798.1 + 57517 0.73 0.693075
Target:  5'- gGGUUGGGggGGCGUgGGuguGGuucgGGggGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCAgCCu--CC----UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 58980 0.69 0.87195
Target:  5'- cGUCGGcGGccgGGCGaacgCGGGGGGGgcGCg -3'
miRNA:   3'- cCAGCU-CUa--CCGCa---GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 59841 0.72 0.750174
Target:  5'- cGGUCGcccgcguccGGC-UCGGAGGAGGAGUc -3'
miRNA:   3'- -CCAGCucua-----CCGcAGCCUCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 63245 0.79 0.384605
Target:  5'- aGGcUGAGGggaaagcUGGCGUCGGGGGcGGggGCg -3'
miRNA:   3'- -CCaGCUCU-------ACCGCAGCCUCC-UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 64133 0.66 0.962796
Target:  5'- gGGUaucuaGGGGgucGGUGcucgCGGGGGAGAcGGCg -3'
miRNA:   3'- -CCAg----CUCUa--CCGCa---GCCUCCUCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 64346 0.71 0.771023
Target:  5'- uGGaCGAGAaGGCGgaccagggUGGAGGcgGGGAGCg -3'
miRNA:   3'- -CCaGCUCUaCCGCa-------GCCUCC--UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 68135 0.68 0.922545
Target:  5'- cGG-CGAGGgcggaguUGGUGUguaggGGGGGGGAAGUg -3'
miRNA:   3'- -CCaGCUCU-------ACCGCAg----CCUCCUCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.