miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 69660 0.79 0.369097
Target:  5'- uGGUgGAGGUGGgGagGGAGGAG-GGCg -3'
miRNA:   3'- -CCAgCUCUACCgCagCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 83632 0.69 0.864555
Target:  5'- gGGcCG-GA-GGCGggagCGGAGGGGAuguGCg -3'
miRNA:   3'- -CCaGCuCUaCCGCa---GCCUCCUCUu--CG- -5'
5402 3' -54.4 NC_001798.1 + 90804 0.71 0.780309
Target:  5'- cGG-CGAcgcGAUGGCuUCGGGGGucagacccAGAAGCg -3'
miRNA:   3'- -CCaGCU---CUACCGcAGCCUCC--------UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 91287 0.66 0.962796
Target:  5'- cGUCuGGGUGGCucccCGGGGGuugugGGggGCa -3'
miRNA:   3'- cCAGcUCUACCGca--GCCUCC-----UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 94274 0.67 0.947459
Target:  5'- --aCGGGGUguucgccgGGCaGUCGGucGAGggGCg -3'
miRNA:   3'- ccaGCUCUA--------CCG-CAGCCucCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 98578 0.68 0.923093
Target:  5'- uGGcCGcGGUGGCGUCGGcGGccccGGCg -3'
miRNA:   3'- -CCaGCuCUACCGCAGCCuCCucu-UCG- -5'
5402 3' -54.4 NC_001798.1 + 101002 0.69 0.87195
Target:  5'- aGGggGAGGaaGGCG-CGGAGG-GggGCg -3'
miRNA:   3'- -CCagCUCUa-CCGCaGCCUCCuCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 101820 0.69 0.856952
Target:  5'- gGGUUGGGGUaagcucGCGgCGGGGG-GAGGCg -3'
miRNA:   3'- -CCAGCUCUAc-----CGCaGCCUCCuCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 101853 0.71 0.789464
Target:  5'- gGGUCccGgcGGCGgCGGAGGGGGgugGGCg -3'
miRNA:   3'- -CCAGcuCuaCCGCaGCCUCCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 102641 0.68 0.923093
Target:  5'- cGUCGccg-GGCGgCGGAGGGGccgGGGCg -3'
miRNA:   3'- cCAGCucuaCCGCaGCCUCCUC---UUCG- -5'
5402 3' -54.4 NC_001798.1 + 103077 0.66 0.955576
Target:  5'- gGGUCcAGGUGGCGaaaCGGAGcGAu-GGCc -3'
miRNA:   3'- -CCAGcUCUACCGCa--GCCUC-CUcuUCG- -5'
5402 3' -54.4 NC_001798.1 + 107400 0.67 0.928438
Target:  5'- ---gGAGGUGGCG--GGAGGAcuGggGCc -3'
miRNA:   3'- ccagCUCUACCGCagCCUCCU--CuuCG- -5'
5402 3' -54.4 NC_001798.1 + 111643 0.74 0.611865
Target:  5'- cGUCGGG--GGCGcUCGGcGGGGggGCg -3'
miRNA:   3'- cCAGCUCuaCCGC-AGCCuCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 112465 0.69 0.886097
Target:  5'- gGGgaauagUGGGGUGGUGggaGGAGGgugguGGGAGCa -3'
miRNA:   3'- -CCa-----GCUCUACCGCag-CCUCC-----UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 113980 0.66 0.955576
Target:  5'- cGG-CGGuGA-GGCGUUGuGcGGGAGggGCu -3'
miRNA:   3'- -CCaGCU-CUaCCGCAGC-C-UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 117089 0.69 0.87195
Target:  5'- --gCGAGAgcGCGgCGGGGGAGAAcGCg -3'
miRNA:   3'- ccaGCUCUacCGCaGCCUCCUCUU-CG- -5'
5402 3' -54.4 NC_001798.1 + 122214 0.72 0.742464
Target:  5'- uGGUCGAG-UGGCuGgaccgCGGGuGGGAAGCu -3'
miRNA:   3'- -CCAGCUCuACCG-Ca----GCCUcCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 129299 0.67 0.928438
Target:  5'- --cCGcGcgGGCG-CGGAGGAG-GGCg -3'
miRNA:   3'- ccaGCuCuaCCGCaGCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 135860 0.67 0.928438
Target:  5'- -uUCGGGA-GGCGUCuGGAcgcGGAGuacugGAGCg -3'
miRNA:   3'- ccAGCUCUaCCGCAG-CCU---CCUC-----UUCG- -5'
5402 3' -54.4 NC_001798.1 + 137470 0.66 0.966081
Target:  5'- -aUCG-GcgGGgGUUGGGGaGGGggGCc -3'
miRNA:   3'- ccAGCuCuaCCgCAGCCUC-CUCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.