miRNA display CGI


Results 101 - 113 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 145833 0.67 0.933547
Target:  5'- cGGUCGGGGUGGgaGUggUGGuGGGGGAc- -3'
miRNA:   3'- -CCAGCUCUACCg-CA--GCCuCCUCUUcg -5'
5402 3' -54.4 NC_001798.1 + 146096 0.7 0.807343
Target:  5'- aGG-CGGGcgGGCGaaGGAaGGGGggGUg -3'
miRNA:   3'- -CCaGCUCuaCCGCagCCU-CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 147606 0.68 0.905639
Target:  5'- --cUGAGgcGGCGgggagagGGGGGGGggGCg -3'
miRNA:   3'- ccaGCUCuaCCGCag-----CCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 148410 0.69 0.864555
Target:  5'- cGGgCGGGGUgGGCGcCGGGGcGGggGUg -3'
miRNA:   3'- -CCaGCUCUA-CCGCaGCCUCcUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 149399 0.66 0.951632
Target:  5'- --gCGGGG-GGCGUCGGGuagucGGGggGCc -3'
miRNA:   3'- ccaGCUCUaCCGCAGCCUc----CUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 149840 0.72 0.70309
Target:  5'- aGGagGAGGaGGCGgaGGAGGAgGAGGCg -3'
miRNA:   3'- -CCagCUCUaCCGCagCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 149870 0.72 0.70309
Target:  5'- aGGagGAGGaGGCGgaGGAGGAgGAGGCg -3'
miRNA:   3'- -CCagCUCUaCCGCagCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 149900 0.72 0.70309
Target:  5'- aGGagGAGGaGGCGgaGGAGGAgGAGGCg -3'
miRNA:   3'- -CCagCUCUaCCGCagCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 150094 0.75 0.56133
Target:  5'- aGGggCGAGcgcggGGCGgCGGAGGAaGAGGCg -3'
miRNA:   3'- -CCa-GCUCua---CCGCaGCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 150570 0.66 0.955576
Target:  5'- gGGgcccgCGGGgcGGCGcggagacggCGGGGGAGAGucGCu -3'
miRNA:   3'- -CCa----GCUCuaCCGCa--------GCCUCCUCUU--CG- -5'
5402 3' -54.4 NC_001798.1 + 153526 0.77 0.483272
Target:  5'- gGGUCG-GAggGGCGUCaGGGggucGGAGggGCg -3'
miRNA:   3'- -CCAGCuCUa-CCGCAG-CCU----CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 153564 0.77 0.483272
Target:  5'- gGGUCG-GAggGGCGUCaGGGggucGGAGggGCg -3'
miRNA:   3'- -CCAGCuCUa-CCGCAG-CCU----CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 153621 0.86 0.156282
Target:  5'- gGGUCgGAGGggcgucagGGgGUCGGAGGGGAGGCg -3'
miRNA:   3'- -CCAG-CUCUa-------CCgCAGCCUCCUCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.