Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5402 | 3' | -54.4 | NC_001798.1 | + | 111643 | 0.74 | 0.611865 |
Target: 5'- cGUCGGG--GGCGcUCGGcGGGGggGCg -3' miRNA: 3'- cCAGCUCuaCCGC-AGCCuCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 107400 | 0.67 | 0.928438 |
Target: 5'- ---gGAGGUGGCG--GGAGGAcuGggGCc -3' miRNA: 3'- ccagCUCUACCGCagCCUCCU--CuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 103077 | 0.66 | 0.955576 |
Target: 5'- gGGUCcAGGUGGCGaaaCGGAGcGAu-GGCc -3' miRNA: 3'- -CCAGcUCUACCGCa--GCCUC-CUcuUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 102641 | 0.68 | 0.923093 |
Target: 5'- cGUCGccg-GGCGgCGGAGGGGccgGGGCg -3' miRNA: 3'- cCAGCucuaCCGCaGCCUCCUC---UUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 101853 | 0.71 | 0.789464 |
Target: 5'- gGGUCccGgcGGCGgCGGAGGGGGgugGGCg -3' miRNA: 3'- -CCAGcuCuaCCGCaGCCUCCUCU---UCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 101820 | 0.69 | 0.856952 |
Target: 5'- gGGUUGGGGUaagcucGCGgCGGGGG-GAGGCg -3' miRNA: 3'- -CCAGCUCUAc-----CGCaGCCUCCuCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 101002 | 0.69 | 0.87195 |
Target: 5'- aGGggGAGGaaGGCG-CGGAGG-GggGCg -3' miRNA: 3'- -CCagCUCUa-CCGCaGCCUCCuCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 98578 | 0.68 | 0.923093 |
Target: 5'- uGGcCGcGGUGGCGUCGGcGGccccGGCg -3' miRNA: 3'- -CCaGCuCUACCGCAGCCuCCucu-UCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 94274 | 0.67 | 0.947459 |
Target: 5'- --aCGGGGUguucgccgGGCaGUCGGucGAGggGCg -3' miRNA: 3'- ccaGCUCUA--------CCG-CAGCCucCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 91287 | 0.66 | 0.962796 |
Target: 5'- cGUCuGGGUGGCucccCGGGGGuugugGGggGCa -3' miRNA: 3'- cCAGcUCUACCGca--GCCUCC-----UCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 90804 | 0.71 | 0.780309 |
Target: 5'- cGG-CGAcgcGAUGGCuUCGGGGGucagacccAGAAGCg -3' miRNA: 3'- -CCaGCU---CUACCGcAGCCUCC--------UCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 83632 | 0.69 | 0.864555 |
Target: 5'- gGGcCG-GA-GGCGggagCGGAGGGGAuguGCg -3' miRNA: 3'- -CCaGCuCUaCCGCa---GCCUCCUCUu--CG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 69660 | 0.79 | 0.369097 |
Target: 5'- uGGUgGAGGUGGgGagGGAGGAG-GGCg -3' miRNA: 3'- -CCAgCUCUACCgCagCCUCCUCuUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 68135 | 0.68 | 0.922545 |
Target: 5'- cGG-CGAGGgcggaguUGGUGUguaggGGGGGGGAAGUg -3' miRNA: 3'- -CCaGCUCU-------ACCGCAg----CCUCCUCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 64346 | 0.71 | 0.771023 |
Target: 5'- uGGaCGAGAaGGCGgaccagggUGGAGGcgGGGAGCg -3' miRNA: 3'- -CCaGCUCUaCCGCa-------GCCUCC--UCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 64133 | 0.66 | 0.962796 |
Target: 5'- gGGUaucuaGGGGgucGGUGcucgCGGGGGAGAcGGCg -3' miRNA: 3'- -CCAg----CUCUa--CCGCa---GCCUCCUCU-UCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 63245 | 0.79 | 0.384605 |
Target: 5'- aGGcUGAGGggaaagcUGGCGUCGGGGGcGGggGCg -3' miRNA: 3'- -CCaGCUCU-------ACCGCAGCCUCC-UCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 59841 | 0.72 | 0.750174 |
Target: 5'- cGGUCGcccgcguccGGC-UCGGAGGAGGAGUc -3' miRNA: 3'- -CCAGCucua-----CCGcAGCCUCCUCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 58980 | 0.69 | 0.87195 |
Target: 5'- cGUCGGcGGccgGGCGaacgCGGGGGGGgcGCg -3' miRNA: 3'- cCAGCU-CUa--CCGCa---GCCUCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 57517 | 0.73 | 0.693075 |
Target: 5'- gGGUUGGGggGGCGUgGGuguGGuucgGGggGCg -3' miRNA: 3'- -CCAGCUCuaCCGCAgCCu--CC----UCuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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