miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 56195 0.66 0.966081
Target:  5'- gGGUgGGGuGUGGUGgguaCGGGGGAcgGAAGg -3'
miRNA:   3'- -CCAgCUC-UACCGCa---GCCUCCU--CUUCg -5'
5402 3' -54.4 NC_001798.1 + 55462 0.75 0.591557
Target:  5'- uGGUCGguGGGUGGgGUgGGGGaagaaGAGAGGCg -3'
miRNA:   3'- -CCAGC--UCUACCgCAgCCUC-----CUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 51459 0.7 0.841149
Target:  5'- cGGUCGAGAUucucgcgggccGcGUGUCGGGcccGGAGcuGCa -3'
miRNA:   3'- -CCAGCUCUA-----------C-CGCAGCCU---CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 51087 0.71 0.771023
Target:  5'- aGGUCGAGGc--CG-CGGGGGAGAuGGCg -3'
miRNA:   3'- -CCAGCUCUaccGCaGCCUCCUCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 49842 0.66 0.951632
Target:  5'- uGGUgCGaAGugcGGCGgCGGAGGAacccGggGCg -3'
miRNA:   3'- -CCA-GC-UCua-CCGCaGCCUCCU----CuuCG- -5'
5402 3' -54.4 NC_001798.1 + 48607 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 48571 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 48535 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 46518 0.66 0.955576
Target:  5'- -cUCGGcucGGUGaGgGUCGGGGGGGuGGCc -3'
miRNA:   3'- ccAGCU---CUAC-CgCAGCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 45983 0.68 0.911692
Target:  5'- -cUCGuGGAUGuuGUCGGGGGGGAuccaggggagGGCg -3'
miRNA:   3'- ccAGC-UCUACcgCAGCCUCCUCU----------UCG- -5'
5402 3' -54.4 NC_001798.1 + 44843 0.66 0.955576
Target:  5'- cGGagGGGGUGGgGU-GGGGGA-AAGCc -3'
miRNA:   3'- -CCagCUCUACCgCAgCCUCCUcUUCG- -5'
5402 3' -54.4 NC_001798.1 + 43682 0.68 0.91751
Target:  5'- gGGUCGuGGGUGGUcaCGGcccGGAGAuGCg -3'
miRNA:   3'- -CCAGC-UCUACCGcaGCCu--CCUCUuCG- -5'
5402 3' -54.4 NC_001798.1 + 42603 0.69 0.879133
Target:  5'- aGGUCGAGGUacgcGGCcucGUCGuccGGGAGggGg -3'
miRNA:   3'- -CCAGCUCUA----CCG---CAGCc--UCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 41643 0.67 0.947459
Target:  5'- cGGUCGuGA-GGUGcUGGAGGG--AGCg -3'
miRNA:   3'- -CCAGCuCUaCCGCaGCCUCCUcuUCG- -5'
5402 3' -54.4 NC_001798.1 + 40484 0.67 0.944845
Target:  5'- aGUCG-GAcgagccugccugugcUGG-GcCGGGGGAGggGCa -3'
miRNA:   3'- cCAGCuCU---------------ACCgCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 40124 0.69 0.87122
Target:  5'- aGGUCGccggggcugGGAUGGCGgguguccUCcGAGGGGgcGCg -3'
miRNA:   3'- -CCAGC---------UCUACCGC-------AGcCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 39447 0.71 0.798478
Target:  5'- gGGUCaGGGAcaGCGccaucagCGGAGGGGggGCc -3'
miRNA:   3'- -CCAG-CUCUacCGCa------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 39380 0.67 0.928438
Target:  5'- gGGUCGA--UGGUGUCGGcAGaGGgcGCc -3'
miRNA:   3'- -CCAGCUcuACCGCAGCC-UCcUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 38342 0.75 0.591557
Target:  5'- aGGuUCGAGAggGGCGUCGuugucauguugcGAGGGGggGg -3'
miRNA:   3'- -CC-AGCUCUa-CCGCAGC------------CUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 36831 0.67 0.942603
Target:  5'- uGGUCGGcGUGGgGacCGGcugugugguggguGGGGGAGGCa -3'
miRNA:   3'- -CCAGCUcUACCgCa-GCC-------------UCCUCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.