miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 36438 0.68 0.911692
Target:  5'- gGGUCGGGGUcgcGGCGgggaaGGAaGGAaagaccccgGAAGCg -3'
miRNA:   3'- -CCAGCUCUA---CCGCag---CCU-CCU---------CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 36275 0.69 0.856952
Target:  5'- --cCGGGGUgGGCGgCGGGGGGGGGuGCc -3'
miRNA:   3'- ccaGCUCUA-CCGCaGCCUCCUCUU-CG- -5'
5402 3' -54.4 NC_001798.1 + 35799 0.72 0.742464
Target:  5'- -uUCGucg-GGCGgCGGGGGGGggGCg -3'
miRNA:   3'- ccAGCucuaCCGCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 34741 0.68 0.923093
Target:  5'- cGGgccCGGGAgcggGGCGgccCGGgaGGGAGAAGa -3'
miRNA:   3'- -CCa--GCUCUa---CCGCa--GCC--UCCUCUUCg -5'
5402 3' -54.4 NC_001798.1 + 34606 0.66 0.959296
Target:  5'- uGGgacgCGGGcaaagGGCGgcggcggCGGGGGGGggGg -3'
miRNA:   3'- -CCa---GCUCua---CCGCa------GCCUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 33149 0.68 0.903777
Target:  5'- gGGcCgGGGAUGGgGgggaagggaggaggaGGAGGGGggGCg -3'
miRNA:   3'- -CCaG-CUCUACCgCag-------------CCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 32949 0.7 0.849148
Target:  5'- aGUgGGGGUGGgaGUgGGGGGGGggGa -3'
miRNA:   3'- cCAgCUCUACCg-CAgCCUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 31791 0.77 0.455341
Target:  5'- gGGUCGGGAgggccgGGCG-CGGAGG-GAGGa -3'
miRNA:   3'- -CCAGCUCUa-----CCGCaGCCUCCuCUUCg -5'
5402 3' -54.4 NC_001798.1 + 31032 0.8 0.330373
Target:  5'- gGGUCGGGcgGGgGUCGGGcGGGGGucgGGCg -3'
miRNA:   3'- -CCAGCUCuaCCgCAGCCU-CCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 30999 0.8 0.330373
Target:  5'- gGGUCGGGcgGGgGUCGGGcGGGGGucgGGCg -3'
miRNA:   3'- -CCAGCUCuaCCgCAGCCU-CCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 30966 0.8 0.330373
Target:  5'- gGGUCGGGcgGGgGUCGGGcGGGGGucgGGCg -3'
miRNA:   3'- -CCAGCUCuaCCgCAGCCU-CCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 30929 0.68 0.911692
Target:  5'- cGGU-GAGGgcggcgGGgGUCGGGcGGGggGCg -3'
miRNA:   3'- -CCAgCUCUa-----CCgCAGCCUcCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 30019 0.67 0.933547
Target:  5'- --cUGGGggGGCGagGGAggcagGGAGGAGCc -3'
miRNA:   3'- ccaGCUCuaCCGCagCCU-----CCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 28757 0.69 0.856952
Target:  5'- --aCGaAGAcGGCGgacccgCGGAGGAGGAGg -3'
miRNA:   3'- ccaGC-UCUaCCGCa-----GCCUCCUCUUCg -5'
5402 3' -54.4 NC_001798.1 + 27554 0.69 0.886097
Target:  5'- gGGggaGGGgcGGCGcccgCGGGGGAGcGGCc -3'
miRNA:   3'- -CCag-CUCuaCCGCa---GCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 27402 0.66 0.959296
Target:  5'- uGGUgCGAc-UGGCGucuUCGGGGGggcgGGGAGCu -3'
miRNA:   3'- -CCA-GCUcuACCGC---AGCCUCC----UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 27310 0.69 0.864555
Target:  5'- cGG-CGGGAUGGagggGagGGAGGGGGuGGCg -3'
miRNA:   3'- -CCaGCUCUACCg---CagCCUCCUCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 27256 0.72 0.752092
Target:  5'- cGGccgCGGGAccgcagccccgUGGCGcgCGGGGGGGAGGg -3'
miRNA:   3'- -CCa--GCUCU-----------ACCGCa-GCCUCCUCUUCg -5'
5402 3' -54.4 NC_001798.1 + 27219 0.68 0.905639
Target:  5'- --cCGGGGcggGGCG-CGGGGGAGGcGGCc -3'
miRNA:   3'- ccaGCUCUa--CCGCaGCCUCCUCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 27179 0.72 0.742464
Target:  5'- -cUCGGGGccgcgGGCG-CGGGGGgAGggGCg -3'
miRNA:   3'- ccAGCUCUa----CCGCaGCCUCC-UCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.