miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 27130 0.68 0.921995
Target:  5'- aGGagCGGGAgggaaggcacggGGCG-CGGgaGGGAGggGCu -3'
miRNA:   3'- -CCa-GCUCUa-----------CCGCaGCC--UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 27019 0.72 0.722932
Target:  5'- gGGUCGGGcgGGCGggggUCGGGcGGGcGGCa -3'
miRNA:   3'- -CCAGCUCuaCCGC----AGCCUcCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 26974 0.75 0.577407
Target:  5'- gGGUCGGGcgGGCGggggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa------------GCCUCCucUUCG- -5'
5402 3' -54.4 NC_001798.1 + 26930 0.75 0.569355
Target:  5'- gGGUCGGGcgGGCGgggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa-----------GCCUCCucUUCG- -5'
5402 3' -54.4 NC_001798.1 + 26900 0.7 0.824593
Target:  5'- gGGUCGGGcgGGCGggGGucGGGcGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCagCCucCUC-UUCG- -5'
5402 3' -54.4 NC_001798.1 + 26855 0.75 0.577407
Target:  5'- gGGUCGGGcgGGCGggggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa------------GCCUCCucUUCG- -5'
5402 3' -54.4 NC_001798.1 + 26810 0.75 0.577407
Target:  5'- gGGUCGGGcgGGCGggggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa------------GCCUCCucUUCG- -5'
5402 3' -54.4 NC_001798.1 + 23873 0.67 0.933547
Target:  5'- cGGccUCuGGggGGCGcccgaggCGGAGGAGgcGCg -3'
miRNA:   3'- -CC--AGcUCuaCCGCa------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 22888 0.67 0.942603
Target:  5'- gGGUUcGGGUGGCacgguggGcCGGAGGAGAAc- -3'
miRNA:   3'- -CCAGcUCUACCG-------CaGCCUCCUCUUcg -5'
5402 3' -54.4 NC_001798.1 + 22754 0.7 0.81605
Target:  5'- aGGUCGcGAUGGCGgacgaGGAcGGGGGAcGUc -3'
miRNA:   3'- -CCAGCuCUACCGCag---CCU-CCUCUU-CG- -5'
5402 3' -54.4 NC_001798.1 + 22681 0.7 0.832961
Target:  5'- cGGUCG-GA-GGCGaugUCGGcGGAGcAGCg -3'
miRNA:   3'- -CCAGCuCUaCCGC---AGCCuCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 22340 0.69 0.886097
Target:  5'- cGGaCGcGcgGGCGUCGG-GGcGggGCc -3'
miRNA:   3'- -CCaGCuCuaCCGCAGCCuCCuCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 21556 0.68 0.899353
Target:  5'- gGGUgGGGggGGgGggGGGGGAGGgaaaGGCa -3'
miRNA:   3'- -CCAgCUCuaCCgCagCCUCCUCU----UCG- -5'
5402 3' -54.4 NC_001798.1 + 17964 0.67 0.947459
Target:  5'- -uUCGcAGGUccGGaCGUCGGGGGGGGcuGCg -3'
miRNA:   3'- ccAGC-UCUA--CC-GCAGCCUCCUCUu-CG- -5'
5402 3' -54.4 NC_001798.1 + 16063 0.69 0.864555
Target:  5'- aGGUCGcugggggcGGcgGGCGUCuguGGGGGcAGAcAGCg -3'
miRNA:   3'- -CCAGC--------UCuaCCGCAG---CCUCC-UCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 15725 0.68 0.911692
Target:  5'- gGGUCGAcuGAgggugccaUGGCGgUGGccgacacaGGGAGggGCg -3'
miRNA:   3'- -CCAGCU--CU--------ACCGCaGCC--------UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 15489 0.66 0.955192
Target:  5'- gGGUCGuGGgggcUGGUGUggUGGGGGgcguuuucgcugcGGAGGCg -3'
miRNA:   3'- -CCAGCuCU----ACCGCA--GCCUCC-------------UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 15324 0.71 0.798478
Target:  5'- cGGcCGAGGgccccGGCGcgguagCGGGGGGcGAGGCg -3'
miRNA:   3'- -CCaGCUCUa----CCGCa-----GCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 14981 0.66 0.955576
Target:  5'- --gCGGGAgcuugGGCGg-GGGGGcGAGGCg -3'
miRNA:   3'- ccaGCUCUa----CCGCagCCUCCuCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 12554 0.68 0.921443
Target:  5'- uGGUgCGAGGgggGcGCGUCgucaucccggauguGGGGGAGAcguaGGCg -3'
miRNA:   3'- -CCA-GCUCUa--C-CGCAG--------------CCUCCUCU----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.