miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 27402 0.66 0.959296
Target:  5'- uGGUgCGAc-UGGCGucuUCGGGGGggcgGGGAGCu -3'
miRNA:   3'- -CCA-GCUcuACCGC---AGCCUCC----UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 7799 0.66 0.962796
Target:  5'- uGG-CGGGAgccaGG-GUCGGAcaGGAGgcGCa -3'
miRNA:   3'- -CCaGCUCUa---CCgCAGCCU--CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 64133 0.66 0.962796
Target:  5'- gGGUaucuaGGGGgucGGUGcucgCGGGGGAGAcGGCg -3'
miRNA:   3'- -CCAg----CUCUa--CCGCa---GCCUCCUCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 91287 0.66 0.962796
Target:  5'- cGUCuGGGUGGCucccCGGGGGuugugGGggGCa -3'
miRNA:   3'- cCAGcUCUACCGca--GCCUCC-----UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 56195 0.66 0.966081
Target:  5'- gGGUgGGGuGUGGUGgguaCGGGGGAcgGAAGg -3'
miRNA:   3'- -CCAgCUC-UACCGCa---GCCUCCU--CUUCg -5'
5402 3' -54.4 NC_001798.1 + 49842 0.66 0.951632
Target:  5'- uGGUgCGaAGugcGGCGgCGGAGGAacccGggGCg -3'
miRNA:   3'- -CCA-GC-UCua-CCGCaGCCUCCU----CuuCG- -5'
5402 3' -54.4 NC_001798.1 + 2516 0.66 0.951632
Target:  5'- cGGccgCGGcGgcGGCGUCGGcGGGgcgGGggGCg -3'
miRNA:   3'- -CCa--GCU-CuaCCGCAGCC-UCC---UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 129299 0.67 0.928438
Target:  5'- --cCGcGcgGGCG-CGGAGGAG-GGCg -3'
miRNA:   3'- ccaGCuCuaCCGCaGCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 30019 0.67 0.933547
Target:  5'- --cUGGGggGGCGagGGAggcagGGAGGAGCc -3'
miRNA:   3'- ccaGCUCuaCCGCagCCU-----CCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 145833 0.67 0.933547
Target:  5'- cGGUCGGGGUGGgaGUggUGGuGGGGGAc- -3'
miRNA:   3'- -CCAGCUCUACCg-CA--GCCuCCUCUUcg -5'
5402 3' -54.4 NC_001798.1 + 23873 0.67 0.933547
Target:  5'- cGGccUCuGGggGGCGcccgaggCGGAGGAGgcGCg -3'
miRNA:   3'- -CC--AGcUCuaCCGCa------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 4262 0.67 0.937464
Target:  5'- --aCGAGGaGGCGgaugcagacgaGGAGGAgGAGGCg -3'
miRNA:   3'- ccaGCUCUaCCGCag---------CCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 22888 0.67 0.942603
Target:  5'- gGGUUcGGGUGGCacgguggGcCGGAGGAGAAc- -3'
miRNA:   3'- -CCAGcUCUACCG-------CaGCCUCCUCUUcg -5'
5402 3' -54.4 NC_001798.1 + 36831 0.67 0.942603
Target:  5'- uGGUCGGcGUGGgGacCGGcugugugguggguGGGGGAGGCa -3'
miRNA:   3'- -CCAGCUcUACCgCa-GCC-------------UCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 40484 0.67 0.944845
Target:  5'- aGUCG-GAcgagccugccugugcUGG-GcCGGGGGAGggGCa -3'
miRNA:   3'- cCAGCuCU---------------ACCgCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 8875 0.67 0.947459
Target:  5'- cGGaCGcGGAagGGCGcuggCGGAGGgcGGAGGCg -3'
miRNA:   3'- -CCaGC-UCUa-CCGCa---GCCUCC--UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 17964 0.67 0.947459
Target:  5'- -uUCGcAGGUccGGaCGUCGGGGGGGGcuGCg -3'
miRNA:   3'- ccAGC-UCUA--CC-GCAGCCUCCUCUu-CG- -5'
5402 3' -54.4 NC_001798.1 + 94274 0.67 0.947459
Target:  5'- --aCGGGGUguucgccgGGCaGUCGGucGAGggGCg -3'
miRNA:   3'- ccaGCUCUA--------CCG-CAGCCucCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 41643 0.67 0.947459
Target:  5'- cGGUCGuGA-GGUGcUGGAGGG--AGCg -3'
miRNA:   3'- -CCAGCuCUaCCGCaGCCUCCUcuUCG- -5'
5402 3' -54.4 NC_001798.1 + 149399 0.66 0.951632
Target:  5'- --gCGGGG-GGCGUCGGGuagucGGGggGCc -3'
miRNA:   3'- ccaGCUCUaCCGCAGCCUc----CUCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.