miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 30929 0.68 0.911692
Target:  5'- cGGU-GAGGgcggcgGGgGUCGGGcGGGggGCg -3'
miRNA:   3'- -CCAgCUCUa-----CCgCAGCCUcCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 147606 0.68 0.905639
Target:  5'- --cUGAGgcGGCGgggagagGGGGGGGggGCg -3'
miRNA:   3'- ccaGCUCuaCCGCag-----CCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 27219 0.68 0.905639
Target:  5'- --cCGGGGcggGGCG-CGGGGGAGGcGGCc -3'
miRNA:   3'- ccaGCUCUa--CCGCaGCCUCCUCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 33149 0.68 0.903777
Target:  5'- gGGcCgGGGAUGGgGgggaagggaggaggaGGAGGGGggGCg -3'
miRNA:   3'- -CCaG-CUCUACCgCag-------------CCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 21556 0.68 0.899353
Target:  5'- gGGUgGGGggGGgGggGGGGGAGGgaaaGGCa -3'
miRNA:   3'- -CCAgCUCuaCCgCagCCUCCUCU----UCG- -5'
5402 3' -54.4 NC_001798.1 + 22340 0.69 0.886097
Target:  5'- cGGaCGcGcgGGCGUCGG-GGcGggGCc -3'
miRNA:   3'- -CCaGCuCuaCCGCAGCCuCCuCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 112465 0.69 0.886097
Target:  5'- gGGgaauagUGGGGUGGUGggaGGAGGgugguGGGAGCa -3'
miRNA:   3'- -CCa-----GCUCUACCGCag-CCUCC-----UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 43682 0.68 0.91751
Target:  5'- gGGUCGuGGGUGGUcaCGGcccGGAGAuGCg -3'
miRNA:   3'- -CCAGC-UCUACCGcaGCCu--CCUCUuCG- -5'
5402 3' -54.4 NC_001798.1 + 12554 0.68 0.921443
Target:  5'- uGGUgCGAGGgggGcGCGUCgucaucccggauguGGGGGAGAcguaGGCg -3'
miRNA:   3'- -CCA-GCUCUa--C-CGCAG--------------CCUCCUCU----UCG- -5'
5402 3' -54.4 NC_001798.1 + 27130 0.68 0.921995
Target:  5'- aGGagCGGGAgggaaggcacggGGCG-CGGgaGGGAGggGCu -3'
miRNA:   3'- -CCa-GCUCUa-----------CCGCaGCC--UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 145833 0.67 0.933547
Target:  5'- cGGUCGGGGUGGgaGUggUGGuGGGGGAc- -3'
miRNA:   3'- -CCAGCUCUACCg-CA--GCCuCCUCUUcg -5'
5402 3' -54.4 NC_001798.1 + 30019 0.67 0.933547
Target:  5'- --cUGGGggGGCGagGGAggcagGGAGGAGCc -3'
miRNA:   3'- ccaGCUCuaCCGCagCCU-----CCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 129299 0.67 0.928438
Target:  5'- --cCGcGcgGGCG-CGGAGGAG-GGCg -3'
miRNA:   3'- ccaGCuCuaCCGCaGCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 135860 0.67 0.928438
Target:  5'- -uUCGGGA-GGCGUCuGGAcgcGGAGuacugGAGCg -3'
miRNA:   3'- ccAGCUCUaCCGCAG-CCU---CCUC-----UUCG- -5'
5402 3' -54.4 NC_001798.1 + 107400 0.67 0.928438
Target:  5'- ---gGAGGUGGCG--GGAGGAcuGggGCc -3'
miRNA:   3'- ccagCUCUACCGCagCCUCCU--CuuCG- -5'
5402 3' -54.4 NC_001798.1 + 39380 0.67 0.928438
Target:  5'- gGGUCGA--UGGUGUCGGcAGaGGgcGCc -3'
miRNA:   3'- -CCAGCUcuACCGCAGCC-UCcUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 102641 0.68 0.923093
Target:  5'- cGUCGccg-GGCGgCGGAGGGGccgGGGCg -3'
miRNA:   3'- cCAGCucuaCCGCaGCCUCCUC---UUCG- -5'
5402 3' -54.4 NC_001798.1 + 98578 0.68 0.923093
Target:  5'- uGGcCGcGGUGGCGUCGGcGGccccGGCg -3'
miRNA:   3'- -CCaGCuCUACCGCAGCCuCCucu-UCG- -5'
5402 3' -54.4 NC_001798.1 + 34741 0.68 0.923093
Target:  5'- cGGgccCGGGAgcggGGCGgccCGGgaGGGAGAAGa -3'
miRNA:   3'- -CCa--GCUCUa---CCGCa--GCC--UCCUCUUCg -5'
5402 3' -54.4 NC_001798.1 + 68135 0.68 0.922545
Target:  5'- cGG-CGAGGgcggaguUGGUGUguaggGGGGGGGAAGUg -3'
miRNA:   3'- -CCaGCUCU-------ACCGCAg----CCUCCUCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.