miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 107460 0.66 0.843903
Target:  5'- aCC-CCGaGgaCGGCGCGGGGUcUCUg -3'
miRNA:   3'- -GGcGGCaUgaGCCGCGCCUCGuAGAg -5'
5402 5' -58.6 NC_001798.1 + 149437 0.66 0.843903
Target:  5'- gCGCgCGUGCUCGGgGagcaGGGuGCGgcggCUCc -3'
miRNA:   3'- gGCG-GCAUGAGCCgCg---CCU-CGUa---GAG- -5'
5402 5' -58.6 NC_001798.1 + 134928 0.66 0.843903
Target:  5'- gCCGCCG-AgUCGGCgcgugaccugguGCGGGGCGc--- -3'
miRNA:   3'- -GGCGGCaUgAGCCG------------CGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 108819 0.66 0.843903
Target:  5'- cCCGUCGgcCUCGaCGUGGcccgugGGCGUCUg -3'
miRNA:   3'- -GGCGGCauGAGCcGCGCC------UCGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 21798 0.66 0.843903
Target:  5'- cCCGuCCGggcccgcCUCGGgGCGGAGCccgCg- -3'
miRNA:   3'- -GGC-GGCau-----GAGCCgCGCCUCGua-Gag -5'
5402 5' -58.6 NC_001798.1 + 111642 0.66 0.835955
Target:  5'- gCGUCGggggcGCUCGGCgGgGGGGCGgaagagacgCUCg -3'
miRNA:   3'- gGCGGCa----UGAGCCG-CgCCUCGUa--------GAG- -5'
5402 5' -58.6 NC_001798.1 + 91098 0.66 0.831101
Target:  5'- gCCGUCGUggaccccggugcgcuGCUCcGCG-GGGGCGUcCUCg -3'
miRNA:   3'- -GGCGGCA---------------UGAGcCGCgCCUCGUA-GAG- -5'
5402 5' -58.6 NC_001798.1 + 139346 0.66 0.828651
Target:  5'- gCGCUGUGCggccauggcggcgucCGGCGgGGAGgG-CUCg -3'
miRNA:   3'- gGCGGCAUGa--------------GCCGCgCCUCgUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 64773 0.66 0.827831
Target:  5'- -gGCCGUguuucaucauGCUCuGGCGU--AGCAUCUCc -3'
miRNA:   3'- ggCGGCA----------UGAG-CCGCGccUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 2763 0.66 0.827831
Target:  5'- uCCGCgGcgGCggCGGCgGCGGAGC-UCa- -3'
miRNA:   3'- -GGCGgCa-UGa-GCCG-CGCCUCGuAGag -5'
5402 5' -58.6 NC_001798.1 + 135951 0.66 0.827831
Target:  5'- gCGCCcUGCU-GGaCGCGGAGCAa--- -3'
miRNA:   3'- gGCGGcAUGAgCC-GCGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 11465 0.66 0.819538
Target:  5'- gCGCCuGUA-UCGGCGCuG-GCAUCUa -3'
miRNA:   3'- gGCGG-CAUgAGCCGCGcCuCGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 53418 0.66 0.819538
Target:  5'- gCCGCCaagcaggcGCUCGGCGagguGGAGCuGUCg- -3'
miRNA:   3'- -GGCGGca------UGAGCCGCg---CCUCG-UAGag -5'
5402 5' -58.6 NC_001798.1 + 11624 0.66 0.811084
Target:  5'- cUCGCCGcucGCg-GGCGCGG-GCGUCc- -3'
miRNA:   3'- -GGCGGCa--UGagCCGCGCCuCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 16994 0.66 0.811084
Target:  5'- uCCGCgGcGCUUGG-GCGGAGCGc--- -3'
miRNA:   3'- -GGCGgCaUGAGCCgCGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 44975 0.66 0.811084
Target:  5'- uCCGCC---CUCGGagGCGGAGCcgCg- -3'
miRNA:   3'- -GGCGGcauGAGCCg-CGCCUCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 38969 0.66 0.803343
Target:  5'- gCCGCCGUuccgaugauagggucCUgGGgGCGGAGCggCa- -3'
miRNA:   3'- -GGCGGCAu--------------GAgCCgCGCCUCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 2072 0.66 0.802475
Target:  5'- cCCGCCGcGCUCGGCGgaccacucCGGGGgGg--- -3'
miRNA:   3'- -GGCGGCaUGAGCCGC--------GCCUCgUagag -5'
5402 5' -58.6 NC_001798.1 + 81917 0.66 0.802475
Target:  5'- uCCGcCCGgccccgcCUCGGCucGCGGGGCcUUUCc -3'
miRNA:   3'- -GGC-GGCau-----GAGCCG--CGCCUCGuAGAG- -5'
5402 5' -58.6 NC_001798.1 + 66759 0.66 0.802475
Target:  5'- uCCGCCugggGUGCggCGGCGUGG-GCcgCg- -3'
miRNA:   3'- -GGCGG----CAUGa-GCCGCGCCuCGuaGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.