miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 90698 0.68 0.719398
Target:  5'- gCCGCCGccaggcGCUCGcagagaucGCGCGGGGCAc--- -3'
miRNA:   3'- -GGCGGCa-----UGAGC--------CGCGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 124331 0.68 0.719398
Target:  5'- -gGCCGgga-CGGCGCGGAaaGCGUCa- -3'
miRNA:   3'- ggCGGCaugaGCCGCGCCU--CGUAGag -5'
5402 5' -58.6 NC_001798.1 + 96082 0.68 0.729026
Target:  5'- gCCGCCGcAUcagUCcGCGCGGGGCGcgcCUCu -3'
miRNA:   3'- -GGCGGCaUG---AGcCGCGCCUCGUa--GAG- -5'
5402 5' -58.6 NC_001798.1 + 1532 0.69 0.630549
Target:  5'- gCGCCGggaGCaCGGCGCGGcGGUA-CUCg -3'
miRNA:   3'- gGCGGCa--UGaGCCGCGCC-UCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 22324 0.69 0.650483
Target:  5'- gCCGCCGccACggacgCGGaCGCGcGGGCGUCg- -3'
miRNA:   3'- -GGCGGCa-UGa----GCC-GCGC-CUCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 39544 0.69 0.650483
Target:  5'- cUCGCCGUGggUGGCGCcGGGGcCGUC-Cg -3'
miRNA:   3'- -GGCGGCAUgaGCCGCG-CCUC-GUAGaG- -5'
5402 5' -58.6 NC_001798.1 + 132144 0.69 0.650483
Target:  5'- gCCGCCGgggGC-CGGCggGCGGGGCGc--- -3'
miRNA:   3'- -GGCGGCa--UGaGCCG--CGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 77723 0.69 0.670361
Target:  5'- gCCGCCGgcguCgaggCGGCGCuGGAccGCGUCg- -3'
miRNA:   3'- -GGCGGCau--Ga---GCCGCG-CCU--CGUAGag -5'
5402 5' -58.6 NC_001798.1 + 149254 0.69 0.670361
Target:  5'- gUCGCCG-GC-CGGCGCGGGcGCGcccugCUCc -3'
miRNA:   3'- -GGCGGCaUGaGCCGCGCCU-CGUa----GAG- -5'
5402 5' -58.6 NC_001798.1 + 132690 0.69 0.670361
Target:  5'- aCGCCGacgcgGCgcaGGCGCGGGggucgcGCAUCUa -3'
miRNA:   3'- gGCGGCa----UGag-CCGCGCCU------CGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 25954 0.69 0.68026
Target:  5'- gCGCCGUGCgcuggccggCGGCGCGGGaccugcGCcgCa- -3'
miRNA:   3'- gGCGGCAUGa--------GCCGCGCCU------CGuaGag -5'
5402 5' -58.6 NC_001798.1 + 5413 0.7 0.570997
Target:  5'- gCCGCCGccGCUCcGCccGCGcGGCAUCUCa -3'
miRNA:   3'- -GGCGGCa-UGAGcCG--CGCcUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 135787 0.7 0.570997
Target:  5'- cCCGCCGgaggaggccgugUGCgCGGCcCGGGGCGUCa- -3'
miRNA:   3'- -GGCGGC------------AUGaGCCGcGCCUCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 62278 0.7 0.590751
Target:  5'- cCCGCCGggcgGCcCGGCG-GGAGCGcgccaaCUCg -3'
miRNA:   3'- -GGCGGCa---UGaGCCGCgCCUCGUa-----GAG- -5'
5402 5' -58.6 NC_001798.1 + 68285 0.7 0.600674
Target:  5'- aCCGCCccaaaccGCUCGGUGCGGuGCAg--- -3'
miRNA:   3'- -GGCGGca-----UGAGCCGCGCCuCGUagag -5'
5402 5' -58.6 NC_001798.1 + 24449 0.7 0.600674
Target:  5'- cCCGCCG-GCUaCGGCGCcgcgGGGGUG-CUCg -3'
miRNA:   3'- -GGCGGCaUGA-GCCGCG----CCUCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 102910 0.7 0.61062
Target:  5'- gCCGCCGccGCUCGGCcacaaggcuccaGCGGucacgcAGCAUCa- -3'
miRNA:   3'- -GGCGGCa-UGAGCCG------------CGCC------UCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 56047 0.71 0.561177
Target:  5'- aCCGCgGgcuugaauaUCGGgGCGGGGCGcUCUCu -3'
miRNA:   3'- -GGCGgCaug------AGCCgCGCCUCGU-AGAG- -5'
5402 5' -58.6 NC_001798.1 + 88807 0.71 0.550431
Target:  5'- uCCGCCcagcgcgcgucacGUACgCGcGCGUcgcgaGGAGCAUCUCg -3'
miRNA:   3'- -GGCGG-------------CAUGaGC-CGCG-----CCUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 58688 0.72 0.502493
Target:  5'- gCCGCCGUcagggccGCggCGGCGCGGGG-GUCg- -3'
miRNA:   3'- -GGCGGCA-------UGa-GCCGCGCCUCgUAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.