Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5402 | 5' | -58.6 | NC_001798.1 | + | 26344 | 0.72 | 0.475532 |
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Target: 5'- aCGCCGUGCgcggCGGCccgGCGGAGCu---- -3' miRNA: 3'- gGCGGCAUGa---GCCG---CGCCUCGuagag -5' |
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| 5402 | 5' | -58.6 | NC_001798.1 | + | 86892 | 0.72 | 0.48475 |
|
Target: 5'- gCCGCCGggaACccCGGCGUGGAGCGccgggcCUCc -3' miRNA: 3'- -GGCGGCa--UGa-GCCGCGCCUCGUa-----GAG- -5' |
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| 5402 | 5' | -58.6 | NC_001798.1 | + | 111512 | 0.72 | 0.48475 |
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Target: 5'- cUCGCgCGUcaaucccgACUCGGCGUGGGGCucCUCc -3' miRNA: 3'- -GGCG-GCA--------UGAGCCGCGCCUCGuaGAG- -5' |
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| 5402 | 5' | -58.6 | NC_001798.1 | + | 109090 | 0.72 | 0.48475 |
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Target: 5'- cCCGCCGacaacgGCUCGGCGCuGGAcGCc-CUCc -3' miRNA: 3'- -GGCGGCa-----UGAGCCGCG-CCU-CGuaGAG- -5' |
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| 5402 | 5' | -58.6 | NC_001798.1 | + | 58688 | 0.72 | 0.502493 |
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Target: 5'- gCCGCCGUcagggccGCggCGGCGCGGGG-GUCg- -3' miRNA: 3'- -GGCGGCA-------UGa-GCCGCGCCUCgUAGag -5' |
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| 5402 | 5' | -58.6 | NC_001798.1 | + | 120237 | 0.72 | 0.503434 |
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Target: 5'- cCCGCCGagGC-CaGGaUGCGGuGCAUCUCg -3' miRNA: 3'- -GGCGGCa-UGaG-CC-GCGCCuCGUAGAG- -5' |
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| 5402 | 5' | -58.6 | NC_001798.1 | + | 52415 | 0.73 | 0.457365 |
|
Target: 5'- aCGCCGUGCUgGGCGCGGccGUGUa-- -3' miRNA: 3'- gGCGGCAUGAgCCGCGCCu-CGUAgag -5' |
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| 5402 | 5' | -58.6 | NC_001798.1 | + | 52532 | 0.73 | 0.430832 |
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Target: 5'- gCGCCGUGCU-GGCGaCGGGGC-UCa- -3' miRNA: 3'- gGCGGCAUGAgCCGC-GCCUCGuAGag -5' |
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| 5402 | 5' | -58.6 | NC_001798.1 | + | 75351 | 0.73 | 0.412805 |
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Target: 5'- gUCGCCGUACcCGGCGCacccggggcuguuGGAGC-UCUg -3' miRNA: 3'- -GGCGGCAUGaGCCGCG-------------CCUCGuAGAg -5' |
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| 5402 | 5' | -58.6 | NC_001798.1 | + | 35531 | 0.82 | 0.131911 |
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Target: 5'- uCCGCCGcgGC-CGGCGCGGGGCGUUg- -3' miRNA: 3'- -GGCGGCa-UGaGCCGCGCCUCGUAGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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