Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 22324 | 0.69 | 0.650483 |
Target: 5'- gCCGCCGccACggacgCGGaCGCGcGGGCGUCg- -3' miRNA: 3'- -GGCGGCa-UGa----GCC-GCGC-CUCGUAGag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 25954 | 0.69 | 0.68026 |
Target: 5'- gCGCCGUGCgcuggccggCGGCGCGGGaccugcGCcgCa- -3' miRNA: 3'- gGCGGCAUGa--------GCCGCGCCU------CGuaGag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 1532 | 0.69 | 0.630549 |
Target: 5'- gCGCCGggaGCaCGGCGCGGcGGUA-CUCg -3' miRNA: 3'- gGCGGCa--UGaGCCGCGCC-UCGUaGAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 132690 | 0.69 | 0.670361 |
Target: 5'- aCGCCGacgcgGCgcaGGCGCGGGggucgcGCAUCUa -3' miRNA: 3'- gGCGGCa----UGag-CCGCGCCU------CGUAGAg -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 132144 | 0.69 | 0.650483 |
Target: 5'- gCCGCCGgggGC-CGGCggGCGGGGCGc--- -3' miRNA: 3'- -GGCGGCa--UGaGCCG--CGCCUCGUagag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 39544 | 0.69 | 0.650483 |
Target: 5'- cUCGCCGUGggUGGCGCcGGGGcCGUC-Cg -3' miRNA: 3'- -GGCGGCAUgaGCCGCG-CCUC-GUAGaG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 77723 | 0.69 | 0.670361 |
Target: 5'- gCCGCCGgcguCgaggCGGCGCuGGAccGCGUCg- -3' miRNA: 3'- -GGCGGCau--Ga---GCCGCG-CCU--CGUAGag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 97242 | 0.68 | 0.709699 |
Target: 5'- gCGCUGUuCgggCGGCggGCGGAGCAcUUCg -3' miRNA: 3'- gGCGGCAuGa--GCCG--CGCCUCGUaGAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 90698 | 0.68 | 0.719398 |
Target: 5'- gCCGCCGccaggcGCUCGcagagaucGCGCGGGGCAc--- -3' miRNA: 3'- -GGCGGCa-----UGAGC--------CGCGCCUCGUagag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 124331 | 0.68 | 0.719398 |
Target: 5'- -gGCCGgga-CGGCGCGGAaaGCGUCa- -3' miRNA: 3'- ggCGGCaugaGCCGCGCCU--CGUAGag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 96082 | 0.68 | 0.729026 |
Target: 5'- gCCGCCGcAUcagUCcGCGCGGGGCGcgcCUCu -3' miRNA: 3'- -GGCGGCaUG---AGcCGCGCCUCGUa--GAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 36064 | 0.68 | 0.709699 |
Target: 5'- gCUGCCGgagGCUgCgGGCGCGGGGUAg--- -3' miRNA: 3'- -GGCGGCa--UGA-G-CCGCGCCUCGUagag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 109439 | 0.68 | 0.699937 |
Target: 5'- cCCGCCugcgGCUggaGGCGCGccucGGGCAUCUg -3' miRNA: 3'- -GGCGGca--UGAg--CCGCGC----CUCGUAGAg -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 51940 | 0.68 | 0.690122 |
Target: 5'- gCCGCCGUgccgcuGCUCaGCGCGGgaggGGCcgCg- -3' miRNA: 3'- -GGCGGCA------UGAGcCGCGCC----UCGuaGag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 83253 | 0.67 | 0.784827 |
Target: 5'- cCCGCCGaggACUCacggGGUGCuGGGgGUCUUg -3' miRNA: 3'- -GGCGGCa--UGAG----CCGCGcCUCgUAGAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 15569 | 0.67 | 0.79372 |
Target: 5'- gCCGCCGccg-CGGCGgGGAGUggCg- -3' miRNA: 3'- -GGCGGCaugaGCCGCgCCUCGuaGag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 46340 | 0.67 | 0.784827 |
Target: 5'- gUCGCCGUGCUCGGUGgucaccuGCGUuagCUCg -3' miRNA: 3'- -GGCGGCAUGAGCCGCgccu---CGUA---GAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 150424 | 0.67 | 0.784827 |
Target: 5'- gCGgCGg---CGGCGCGGGGCGgaCUCc -3' miRNA: 3'- gGCgGCaugaGCCGCGCCUCGUa-GAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 34572 | 0.67 | 0.784827 |
Target: 5'- cCCGgCGgacgGCUCa-CGCGGcgcGGCGUCUCg -3' miRNA: 3'- -GGCgGCa---UGAGccGCGCC---UCGUAGAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 35579 | 0.67 | 0.784827 |
Target: 5'- cCCGCgGcgcUGCUCGGCuGCGGccGCGggCUCc -3' miRNA: 3'- -GGCGgC---AUGAGCCG-CGCCu-CGUa-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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