miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 35531 0.82 0.131911
Target:  5'- uCCGCCGcgGC-CGGCGCGGGGCGUUg- -3'
miRNA:   3'- -GGCGGCa-UGaGCCGCGCCUCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 75351 0.73 0.412805
Target:  5'- gUCGCCGUACcCGGCGCacccggggcuguuGGAGC-UCUg -3'
miRNA:   3'- -GGCGGCAUGaGCCGCG-------------CCUCGuAGAg -5'
5402 5' -58.6 NC_001798.1 + 52532 0.73 0.430832
Target:  5'- gCGCCGUGCU-GGCGaCGGGGC-UCa- -3'
miRNA:   3'- gGCGGCAUGAgCCGC-GCCUCGuAGag -5'
5402 5' -58.6 NC_001798.1 + 52415 0.73 0.457365
Target:  5'- aCGCCGUGCUgGGCGCGGccGUGUa-- -3'
miRNA:   3'- gGCGGCAUGAgCCGCGCCu-CGUAgag -5'
5402 5' -58.6 NC_001798.1 + 108219 0.72 0.466403
Target:  5'- cCCGCaCGUACU-GGCGCGacacaaacaccGGGCGUCUg -3'
miRNA:   3'- -GGCG-GCAUGAgCCGCGC-----------CUCGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 26344 0.72 0.475532
Target:  5'- aCGCCGUGCgcggCGGCccgGCGGAGCu---- -3'
miRNA:   3'- gGCGGCAUGa---GCCG---CGCCUCGuagag -5'
5402 5' -58.6 NC_001798.1 + 111512 0.72 0.48475
Target:  5'- cUCGCgCGUcaaucccgACUCGGCGUGGGGCucCUCc -3'
miRNA:   3'- -GGCG-GCA--------UGAGCCGCGCCUCGuaGAG- -5'
5402 5' -58.6 NC_001798.1 + 86892 0.72 0.48475
Target:  5'- gCCGCCGggaACccCGGCGUGGAGCGccgggcCUCc -3'
miRNA:   3'- -GGCGGCa--UGa-GCCGCGCCUCGUa-----GAG- -5'
5402 5' -58.6 NC_001798.1 + 109090 0.72 0.48475
Target:  5'- cCCGCCGacaacgGCUCGGCGCuGGAcGCc-CUCc -3'
miRNA:   3'- -GGCGGCa-----UGAGCCGCG-CCU-CGuaGAG- -5'
5402 5' -58.6 NC_001798.1 + 58688 0.72 0.502493
Target:  5'- gCCGCCGUcagggccGCggCGGCGCGGGG-GUCg- -3'
miRNA:   3'- -GGCGGCA-------UGa-GCCGCGCCUCgUAGag -5'
5402 5' -58.6 NC_001798.1 + 120237 0.72 0.503434
Target:  5'- cCCGCCGagGC-CaGGaUGCGGuGCAUCUCg -3'
miRNA:   3'- -GGCGGCa-UGaG-CC-GCGCCuCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 88807 0.71 0.550431
Target:  5'- uCCGCCcagcgcgcgucacGUACgCGcGCGUcgcgaGGAGCAUCUCg -3'
miRNA:   3'- -GGCGG-------------CAUGaGC-CGCG-----CCUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 56047 0.71 0.561177
Target:  5'- aCCGCgGgcuugaauaUCGGgGCGGGGCGcUCUCu -3'
miRNA:   3'- -GGCGgCaug------AGCCgCGCCUCGU-AGAG- -5'
5402 5' -58.6 NC_001798.1 + 5413 0.7 0.570997
Target:  5'- gCCGCCGccGCUCcGCccGCGcGGCAUCUCa -3'
miRNA:   3'- -GGCGGCa-UGAGcCG--CGCcUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 135787 0.7 0.570997
Target:  5'- cCCGCCGgaggaggccgugUGCgCGGCcCGGGGCGUCa- -3'
miRNA:   3'- -GGCGGC------------AUGaGCCGcGCCUCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 62278 0.7 0.590751
Target:  5'- cCCGCCGggcgGCcCGGCG-GGAGCGcgccaaCUCg -3'
miRNA:   3'- -GGCGGCa---UGaGCCGCgCCUCGUa-----GAG- -5'
5402 5' -58.6 NC_001798.1 + 68285 0.7 0.600674
Target:  5'- aCCGCCccaaaccGCUCGGUGCGGuGCAg--- -3'
miRNA:   3'- -GGCGGca-----UGAGCCGCGCCuCGUagag -5'
5402 5' -58.6 NC_001798.1 + 24449 0.7 0.600674
Target:  5'- cCCGCCG-GCUaCGGCGCcgcgGGGGUG-CUCg -3'
miRNA:   3'- -GGCGGCaUGA-GCCGCG----CCUCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 102910 0.7 0.61062
Target:  5'- gCCGCCGccGCUCGGCcacaaggcuccaGCGGucacgcAGCAUCa- -3'
miRNA:   3'- -GGCGGCa-UGAGCCG------------CGCC------UCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 1532 0.69 0.630549
Target:  5'- gCGCCGggaGCaCGGCGCGGcGGUA-CUCg -3'
miRNA:   3'- gGCGGCa--UGaGCCGCGCC-UCGUaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.