Results 21 - 40 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 22324 | 0.69 | 0.650483 |
Target: 5'- gCCGCCGccACggacgCGGaCGCGcGGGCGUCg- -3' miRNA: 3'- -GGCGGCa-UGa----GCC-GCGC-CUCGUAGag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 39544 | 0.69 | 0.650483 |
Target: 5'- cUCGCCGUGggUGGCGCcGGGGcCGUC-Cg -3' miRNA: 3'- -GGCGGCAUgaGCCGCG-CCUC-GUAGaG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 132144 | 0.69 | 0.650483 |
Target: 5'- gCCGCCGgggGC-CGGCggGCGGGGCGc--- -3' miRNA: 3'- -GGCGGCa--UGaGCCG--CGCCUCGUagag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 77723 | 0.69 | 0.670361 |
Target: 5'- gCCGCCGgcguCgaggCGGCGCuGGAccGCGUCg- -3' miRNA: 3'- -GGCGGCau--Ga---GCCGCG-CCU--CGUAGag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 132690 | 0.69 | 0.670361 |
Target: 5'- aCGCCGacgcgGCgcaGGCGCGGGggucgcGCAUCUa -3' miRNA: 3'- gGCGGCa----UGag-CCGCGCCU------CGUAGAg -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 149254 | 0.69 | 0.670361 |
Target: 5'- gUCGCCG-GC-CGGCGCGGGcGCGcccugCUCc -3' miRNA: 3'- -GGCGGCaUGaGCCGCGCCU-CGUa----GAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 25954 | 0.69 | 0.68026 |
Target: 5'- gCGCCGUGCgcuggccggCGGCGCGGGaccugcGCcgCa- -3' miRNA: 3'- gGCGGCAUGa--------GCCGCGCCU------CGuaGag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 51940 | 0.68 | 0.690122 |
Target: 5'- gCCGCCGUgccgcuGCUCaGCGCGGgaggGGCcgCg- -3' miRNA: 3'- -GGCGGCA------UGAGcCGCGCC----UCGuaGag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 109439 | 0.68 | 0.699937 |
Target: 5'- cCCGCCugcgGCUggaGGCGCGccucGGGCAUCUg -3' miRNA: 3'- -GGCGGca--UGAg--CCGCGC----CUCGUAGAg -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 36064 | 0.68 | 0.709699 |
Target: 5'- gCUGCCGgagGCUgCgGGCGCGGGGUAg--- -3' miRNA: 3'- -GGCGGCa--UGA-G-CCGCGCCUCGUagag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 97242 | 0.68 | 0.709699 |
Target: 5'- gCGCUGUuCgggCGGCggGCGGAGCAcUUCg -3' miRNA: 3'- gGCGGCAuGa--GCCG--CGCCUCGUaGAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 90698 | 0.68 | 0.719398 |
Target: 5'- gCCGCCGccaggcGCUCGcagagaucGCGCGGGGCAc--- -3' miRNA: 3'- -GGCGGCa-----UGAGC--------CGCGCCUCGUagag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 124331 | 0.68 | 0.719398 |
Target: 5'- -gGCCGgga-CGGCGCGGAaaGCGUCa- -3' miRNA: 3'- ggCGGCaugaGCCGCGCCU--CGUAGag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 96082 | 0.68 | 0.729026 |
Target: 5'- gCCGCCGcAUcagUCcGCGCGGGGCGcgcCUCu -3' miRNA: 3'- -GGCGGCaUG---AGcCGCGCCUCGUa--GAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 26176 | 0.67 | 0.748035 |
Target: 5'- gCGCCGUGCUccCGGCGCuGGAcggccgggccGCcgcCUCg -3' miRNA: 3'- gGCGGCAUGA--GCCGCG-CCU----------CGua-GAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 2632 | 0.67 | 0.766658 |
Target: 5'- gCGCCcugGC-CGGgGCGGGGC-UCUUg -3' miRNA: 3'- gGCGGca-UGaGCCgCGCCUCGuAGAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 153700 | 0.67 | 0.766658 |
Target: 5'- gCCGCCGgcgcagGCUCaGGCGCGccaGGUA-CUCc -3' miRNA: 3'- -GGCGGCa-----UGAG-CCGCGCc--UCGUaGAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 102807 | 0.67 | 0.77216 |
Target: 5'- gCGCCGguuuuauacccgcGCUcCGGCGCaGGGGCAgaCUCc -3' miRNA: 3'- gGCGGCa------------UGA-GCCGCG-CCUCGUa-GAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 110848 | 0.67 | 0.775804 |
Target: 5'- -gGCCGUGCUgGGCGCGaGccaGGCAa--- -3' miRNA: 3'- ggCGGCAUGAgCCGCGC-C---UCGUagag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 85487 | 0.67 | 0.782133 |
Target: 5'- gCGCCaaGUGcCUgGGCGCGccccacugcgccgcGAGCAUCUUc -3' miRNA: 3'- gGCGG--CAU-GAgCCGCGC--------------CUCGUAGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home