miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 81917 0.66 0.802475
Target:  5'- uCCGcCCGgccccgcCUCGGCucGCGGGGCcUUUCc -3'
miRNA:   3'- -GGC-GGCau-----GAGCCG--CGCCUCGuAGAG- -5'
5402 5' -58.6 NC_001798.1 + 2072 0.66 0.802475
Target:  5'- cCCGCCGcGCUCGGCGgaccacucCGGGGgGg--- -3'
miRNA:   3'- -GGCGGCaUGAGCCGC--------GCCUCgUagag -5'
5402 5' -58.6 NC_001798.1 + 115538 0.66 0.802475
Target:  5'- cCCgGCCGgcCcCGGCGCGGAcaugcagcaGCGUUUUc -3'
miRNA:   3'- -GG-CGGCauGaGCCGCGCCU---------CGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 79646 0.67 0.79372
Target:  5'- cCCgGCCGUcaccgacaaACUCGGCGCGcugcuGAuGCGUCcCg -3'
miRNA:   3'- -GG-CGGCA---------UGAGCCGCGC-----CU-CGUAGaG- -5'
5402 5' -58.6 NC_001798.1 + 15569 0.67 0.79372
Target:  5'- gCCGCCGccg-CGGCGgGGAGUggCg- -3'
miRNA:   3'- -GGCGGCaugaGCCGCgCCUCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 150424 0.67 0.784827
Target:  5'- gCGgCGg---CGGCGCGGGGCGgaCUCc -3'
miRNA:   3'- gGCgGCaugaGCCGCGCCUCGUa-GAG- -5'
5402 5' -58.6 NC_001798.1 + 34572 0.67 0.784827
Target:  5'- cCCGgCGgacgGCUCa-CGCGGcgcGGCGUCUCg -3'
miRNA:   3'- -GGCgGCa---UGAGccGCGCC---UCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 35579 0.67 0.784827
Target:  5'- cCCGCgGcgcUGCUCGGCuGCGGccGCGggCUCc -3'
miRNA:   3'- -GGCGgC---AUGAGCCG-CGCCu-CGUa-GAG- -5'
5402 5' -58.6 NC_001798.1 + 83253 0.67 0.784827
Target:  5'- cCCGCCGaggACUCacggGGUGCuGGGgGUCUUg -3'
miRNA:   3'- -GGCGGCa--UGAG----CCGCGcCUCgUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 46340 0.67 0.784827
Target:  5'- gUCGCCGUGCUCGGUGgucaccuGCGUuagCUCg -3'
miRNA:   3'- -GGCGGCAUGAGCCGCgccu---CGUA---GAG- -5'
5402 5' -58.6 NC_001798.1 + 85487 0.67 0.782133
Target:  5'- gCGCCaaGUGcCUgGGCGCGccccacugcgccgcGAGCAUCUUc -3'
miRNA:   3'- gGCGG--CAU-GAgCCGCGC--------------CUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 110848 0.67 0.775804
Target:  5'- -gGCCGUGCUgGGCGCGaGccaGGCAa--- -3'
miRNA:   3'- ggCGGCAUGAgCCGCGC-C---UCGUagag -5'
5402 5' -58.6 NC_001798.1 + 102807 0.67 0.77216
Target:  5'- gCGCCGguuuuauacccgcGCUcCGGCGCaGGGGCAgaCUCc -3'
miRNA:   3'- gGCGGCa------------UGA-GCCGCG-CCUCGUa-GAG- -5'
5402 5' -58.6 NC_001798.1 + 2632 0.67 0.766658
Target:  5'- gCGCCcugGC-CGGgGCGGGGC-UCUUg -3'
miRNA:   3'- gGCGGca-UGaGCCgCGCCUCGuAGAG- -5'
5402 5' -58.6 NC_001798.1 + 153700 0.67 0.766658
Target:  5'- gCCGCCGgcgcagGCUCaGGCGCGccaGGUA-CUCc -3'
miRNA:   3'- -GGCGGCa-----UGAG-CCGCGCc--UCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 26176 0.67 0.748035
Target:  5'- gCGCCGUGCUccCGGCGCuGGAcggccgggccGCcgcCUCg -3'
miRNA:   3'- gGCGGCAUGA--GCCGCG-CCU----------CGua-GAG- -5'
5402 5' -58.6 NC_001798.1 + 96082 0.68 0.729026
Target:  5'- gCCGCCGcAUcagUCcGCGCGGGGCGcgcCUCu -3'
miRNA:   3'- -GGCGGCaUG---AGcCGCGCCUCGUa--GAG- -5'
5402 5' -58.6 NC_001798.1 + 124331 0.68 0.719398
Target:  5'- -gGCCGgga-CGGCGCGGAaaGCGUCa- -3'
miRNA:   3'- ggCGGCaugaGCCGCGCCU--CGUAGag -5'
5402 5' -58.6 NC_001798.1 + 90698 0.68 0.719398
Target:  5'- gCCGCCGccaggcGCUCGcagagaucGCGCGGGGCAc--- -3'
miRNA:   3'- -GGCGGCa-----UGAGC--------CGCGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 36064 0.68 0.709699
Target:  5'- gCUGCCGgagGCUgCgGGCGCGGGGUAg--- -3'
miRNA:   3'- -GGCGGCa--UGA-G-CCGCGCCUCGUagag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.