Results 61 - 70 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 58688 | 0.72 | 0.502493 |
Target: 5'- gCCGCCGUcagggccGCggCGGCGCGGGG-GUCg- -3' miRNA: 3'- -GGCGGCA-------UGa-GCCGCGCCUCgUAGag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 86892 | 0.72 | 0.48475 |
Target: 5'- gCCGCCGggaACccCGGCGUGGAGCGccgggcCUCc -3' miRNA: 3'- -GGCGGCa--UGa-GCCGCGCCUCGUa-----GAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 111512 | 0.72 | 0.48475 |
Target: 5'- cUCGCgCGUcaaucccgACUCGGCGUGGGGCucCUCc -3' miRNA: 3'- -GGCG-GCA--------UGAGCCGCGCCUCGuaGAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 109090 | 0.72 | 0.48475 |
Target: 5'- cCCGCCGacaacgGCUCGGCGCuGGAcGCc-CUCc -3' miRNA: 3'- -GGCGGCa-----UGAGCCGCG-CCU-CGuaGAG- -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 26344 | 0.72 | 0.475532 |
Target: 5'- aCGCCGUGCgcggCGGCccgGCGGAGCu---- -3' miRNA: 3'- gGCGGCAUGa---GCCG---CGCCUCGuagag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 108219 | 0.72 | 0.466403 |
Target: 5'- cCCGCaCGUACU-GGCGCGacacaaacaccGGGCGUCUg -3' miRNA: 3'- -GGCG-GCAUGAgCCGCGC-----------CUCGUAGAg -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 52415 | 0.73 | 0.457365 |
Target: 5'- aCGCCGUGCUgGGCGCGGccGUGUa-- -3' miRNA: 3'- gGCGGCAUGAgCCGCGCCu-CGUAgag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 52532 | 0.73 | 0.430832 |
Target: 5'- gCGCCGUGCU-GGCGaCGGGGC-UCa- -3' miRNA: 3'- gGCGGCAUGAgCCGC-GCCUCGuAGag -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 75351 | 0.73 | 0.412805 |
Target: 5'- gUCGCCGUACcCGGCGCacccggggcuguuGGAGC-UCUg -3' miRNA: 3'- -GGCGGCAUGaGCCGCG-------------CCUCGuAGAg -5' |
|||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 35531 | 0.82 | 0.131911 |
Target: 5'- uCCGCCGcgGC-CGGCGCGGGGCGUUg- -3' miRNA: 3'- -GGCGGCa-UGaGCCGCGCCUCGUAGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home