miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 1532 0.69 0.630549
Target:  5'- gCGCCGggaGCaCGGCGCGGcGGUA-CUCg -3'
miRNA:   3'- gGCGGCa--UGaGCCGCGCC-UCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 2072 0.66 0.802475
Target:  5'- cCCGCCGcGCUCGGCGgaccacucCGGGGgGg--- -3'
miRNA:   3'- -GGCGGCaUGAGCCGC--------GCCUCgUagag -5'
5402 5' -58.6 NC_001798.1 + 2632 0.67 0.766658
Target:  5'- gCGCCcugGC-CGGgGCGGGGC-UCUUg -3'
miRNA:   3'- gGCGGca-UGaGCCgCGCCUCGuAGAG- -5'
5402 5' -58.6 NC_001798.1 + 2763 0.66 0.827831
Target:  5'- uCCGCgGcgGCggCGGCgGCGGAGC-UCa- -3'
miRNA:   3'- -GGCGgCa-UGa-GCCG-CGCCUCGuAGag -5'
5402 5' -58.6 NC_001798.1 + 3190 0.66 0.802475
Target:  5'- gUCGUCGgccccgGC-CGGCGCGGAGgCGggcgcggcgCUCa -3'
miRNA:   3'- -GGCGGCa-----UGaGCCGCGCCUC-GUa--------GAG- -5'
5402 5' -58.6 NC_001798.1 + 5413 0.7 0.570997
Target:  5'- gCCGCCGccGCUCcGCccGCGcGGCAUCUCa -3'
miRNA:   3'- -GGCGGCa-UGAGcCG--CGCcUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 11465 0.66 0.819538
Target:  5'- gCGCCuGUA-UCGGCGCuG-GCAUCUa -3'
miRNA:   3'- gGCGG-CAUgAGCCGCGcCuCGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 11624 0.66 0.811084
Target:  5'- cUCGCCGcucGCg-GGCGCGG-GCGUCc- -3'
miRNA:   3'- -GGCGGCa--UGagCCGCGCCuCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 15569 0.67 0.79372
Target:  5'- gCCGCCGccg-CGGCGgGGAGUggCg- -3'
miRNA:   3'- -GGCGGCaugaGCCGCgCCUCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 16994 0.66 0.811084
Target:  5'- uCCGCgGcGCUUGG-GCGGAGCGc--- -3'
miRNA:   3'- -GGCGgCaUGAGCCgCGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 21798 0.66 0.843903
Target:  5'- cCCGuCCGggcccgcCUCGGgGCGGAGCccgCg- -3'
miRNA:   3'- -GGC-GGCau-----GAGCCgCGCCUCGua-Gag -5'
5402 5' -58.6 NC_001798.1 + 22324 0.69 0.650483
Target:  5'- gCCGCCGccACggacgCGGaCGCGcGGGCGUCg- -3'
miRNA:   3'- -GGCGGCa-UGa----GCC-GCGC-CUCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 24449 0.7 0.600674
Target:  5'- cCCGCCG-GCUaCGGCGCcgcgGGGGUG-CUCg -3'
miRNA:   3'- -GGCGGCaUGA-GCCGCG----CCUCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 25954 0.69 0.68026
Target:  5'- gCGCCGUGCgcuggccggCGGCGCGGGaccugcGCcgCa- -3'
miRNA:   3'- gGCGGCAUGa--------GCCGCGCCU------CGuaGag -5'
5402 5' -58.6 NC_001798.1 + 26176 0.67 0.748035
Target:  5'- gCGCCGUGCUccCGGCGCuGGAcggccgggccGCcgcCUCg -3'
miRNA:   3'- gGCGGCAUGA--GCCGCG-CCU----------CGua-GAG- -5'
5402 5' -58.6 NC_001798.1 + 26344 0.72 0.475532
Target:  5'- aCGCCGUGCgcggCGGCccgGCGGAGCu---- -3'
miRNA:   3'- gGCGGCAUGa---GCCG---CGCCUCGuagag -5'
5402 5' -58.6 NC_001798.1 + 34572 0.67 0.784827
Target:  5'- cCCGgCGgacgGCUCa-CGCGGcgcGGCGUCUCg -3'
miRNA:   3'- -GGCgGCa---UGAGccGCGCC---UCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 35531 0.82 0.131911
Target:  5'- uCCGCCGcgGC-CGGCGCGGGGCGUUg- -3'
miRNA:   3'- -GGCGGCa-UGaGCCGCGCCUCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 35579 0.67 0.784827
Target:  5'- cCCGCgGcgcUGCUCGGCuGCGGccGCGggCUCc -3'
miRNA:   3'- -GGCGgC---AUGAGCCG-CGCCu-CGUa-GAG- -5'
5402 5' -58.6 NC_001798.1 + 36064 0.68 0.709699
Target:  5'- gCUGCCGgagGCUgCgGGCGCGGGGUAg--- -3'
miRNA:   3'- -GGCGGCa--UGA-G-CCGCGCCUCGUagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.