miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 38969 0.66 0.803343
Target:  5'- gCCGCCGUuccgaugauagggucCUgGGgGCGGAGCggCa- -3'
miRNA:   3'- -GGCGGCAu--------------GAgCCgCGCCUCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 39544 0.69 0.650483
Target:  5'- cUCGCCGUGggUGGCGCcGGGGcCGUC-Cg -3'
miRNA:   3'- -GGCGGCAUgaGCCGCG-CCUC-GUAGaG- -5'
5402 5' -58.6 NC_001798.1 + 44975 0.66 0.811084
Target:  5'- uCCGCC---CUCGGagGCGGAGCcgCg- -3'
miRNA:   3'- -GGCGGcauGAGCCg-CGCCUCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 46340 0.67 0.784827
Target:  5'- gUCGCCGUGCUCGGUGgucaccuGCGUuagCUCg -3'
miRNA:   3'- -GGCGGCAUGAGCCGCgccu---CGUA---GAG- -5'
5402 5' -58.6 NC_001798.1 + 51940 0.68 0.690122
Target:  5'- gCCGCCGUgccgcuGCUCaGCGCGGgaggGGCcgCg- -3'
miRNA:   3'- -GGCGGCA------UGAGcCGCGCC----UCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 52415 0.73 0.457365
Target:  5'- aCGCCGUGCUgGGCGCGGccGUGUa-- -3'
miRNA:   3'- gGCGGCAUGAgCCGCGCCu-CGUAgag -5'
5402 5' -58.6 NC_001798.1 + 52532 0.73 0.430832
Target:  5'- gCGCCGUGCU-GGCGaCGGGGC-UCa- -3'
miRNA:   3'- gGCGGCAUGAgCCGC-GCCUCGuAGag -5'
5402 5' -58.6 NC_001798.1 + 53418 0.66 0.819538
Target:  5'- gCCGCCaagcaggcGCUCGGCGagguGGAGCuGUCg- -3'
miRNA:   3'- -GGCGGca------UGAGCCGCg---CCUCG-UAGag -5'
5402 5' -58.6 NC_001798.1 + 56047 0.71 0.561177
Target:  5'- aCCGCgGgcuugaauaUCGGgGCGGGGCGcUCUCu -3'
miRNA:   3'- -GGCGgCaug------AGCCgCGCCUCGU-AGAG- -5'
5402 5' -58.6 NC_001798.1 + 58540 0.66 0.802475
Target:  5'- uCCGUgGUcuguuggccGCUCGGCGUccuccGGGGCGUaUCg -3'
miRNA:   3'- -GGCGgCA---------UGAGCCGCG-----CCUCGUAgAG- -5'
5402 5' -58.6 NC_001798.1 + 58688 0.72 0.502493
Target:  5'- gCCGCCGUcagggccGCggCGGCGCGGGG-GUCg- -3'
miRNA:   3'- -GGCGGCA-------UGa-GCCGCGCCUCgUAGag -5'
5402 5' -58.6 NC_001798.1 + 62278 0.7 0.590751
Target:  5'- cCCGCCGggcgGCcCGGCG-GGAGCGcgccaaCUCg -3'
miRNA:   3'- -GGCGGCa---UGaGCCGCgCCUCGUa-----GAG- -5'
5402 5' -58.6 NC_001798.1 + 64773 0.66 0.827831
Target:  5'- -gGCCGUguuucaucauGCUCuGGCGU--AGCAUCUCc -3'
miRNA:   3'- ggCGGCA----------UGAG-CCGCGccUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 66759 0.66 0.802475
Target:  5'- uCCGCCugggGUGCggCGGCGUGG-GCcgCg- -3'
miRNA:   3'- -GGCGG----CAUGa-GCCGCGCCuCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 68285 0.7 0.600674
Target:  5'- aCCGCCccaaaccGCUCGGUGCGGuGCAg--- -3'
miRNA:   3'- -GGCGGca-----UGAGCCGCGCCuCGUagag -5'
5402 5' -58.6 NC_001798.1 + 75351 0.73 0.412805
Target:  5'- gUCGCCGUACcCGGCGCacccggggcuguuGGAGC-UCUg -3'
miRNA:   3'- -GGCGGCAUGaGCCGCG-------------CCUCGuAGAg -5'
5402 5' -58.6 NC_001798.1 + 77723 0.69 0.670361
Target:  5'- gCCGCCGgcguCgaggCGGCGCuGGAccGCGUCg- -3'
miRNA:   3'- -GGCGGCau--Ga---GCCGCG-CCU--CGUAGag -5'
5402 5' -58.6 NC_001798.1 + 79646 0.67 0.79372
Target:  5'- cCCgGCCGUcaccgacaaACUCGGCGCGcugcuGAuGCGUCcCg -3'
miRNA:   3'- -GG-CGGCA---------UGAGCCGCGC-----CU-CGUAGaG- -5'
5402 5' -58.6 NC_001798.1 + 81917 0.66 0.802475
Target:  5'- uCCGcCCGgccccgcCUCGGCucGCGGGGCcUUUCc -3'
miRNA:   3'- -GGC-GGCau-----GAGCCG--CGCCUCGuAGAG- -5'
5402 5' -58.6 NC_001798.1 + 83253 0.67 0.784827
Target:  5'- cCCGCCGaggACUCacggGGUGCuGGGgGUCUUg -3'
miRNA:   3'- -GGCGGCa--UGAG----CCGCGcCUCgUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.