miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 85487 0.67 0.782133
Target:  5'- gCGCCaaGUGcCUgGGCGCGccccacugcgccgcGAGCAUCUUc -3'
miRNA:   3'- gGCGG--CAU-GAgCCGCGC--------------CUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 86892 0.72 0.48475
Target:  5'- gCCGCCGggaACccCGGCGUGGAGCGccgggcCUCc -3'
miRNA:   3'- -GGCGGCa--UGa-GCCGCGCCUCGUa-----GAG- -5'
5402 5' -58.6 NC_001798.1 + 88807 0.71 0.550431
Target:  5'- uCCGCCcagcgcgcgucacGUACgCGcGCGUcgcgaGGAGCAUCUCg -3'
miRNA:   3'- -GGCGG-------------CAUGaGC-CGCG-----CCUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 90698 0.68 0.719398
Target:  5'- gCCGCCGccaggcGCUCGcagagaucGCGCGGGGCAc--- -3'
miRNA:   3'- -GGCGGCa-----UGAGC--------CGCGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 91098 0.66 0.831101
Target:  5'- gCCGUCGUggaccccggugcgcuGCUCcGCG-GGGGCGUcCUCg -3'
miRNA:   3'- -GGCGGCA---------------UGAGcCGCgCCUCGUA-GAG- -5'
5402 5' -58.6 NC_001798.1 + 96082 0.68 0.729026
Target:  5'- gCCGCCGcAUcagUCcGCGCGGGGCGcgcCUCu -3'
miRNA:   3'- -GGCGGCaUG---AGcCGCGCCUCGUa--GAG- -5'
5402 5' -58.6 NC_001798.1 + 97242 0.68 0.709699
Target:  5'- gCGCUGUuCgggCGGCggGCGGAGCAcUUCg -3'
miRNA:   3'- gGCGGCAuGa--GCCG--CGCCUCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 102807 0.67 0.77216
Target:  5'- gCGCCGguuuuauacccgcGCUcCGGCGCaGGGGCAgaCUCc -3'
miRNA:   3'- gGCGGCa------------UGA-GCCGCG-CCUCGUa-GAG- -5'
5402 5' -58.6 NC_001798.1 + 102910 0.7 0.61062
Target:  5'- gCCGCCGccGCUCGGCcacaaggcuccaGCGGucacgcAGCAUCa- -3'
miRNA:   3'- -GGCGGCa-UGAGCCG------------CGCC------UCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 107460 0.66 0.843903
Target:  5'- aCC-CCGaGgaCGGCGCGGGGUcUCUg -3'
miRNA:   3'- -GGcGGCaUgaGCCGCGCCUCGuAGAg -5'
5402 5' -58.6 NC_001798.1 + 108219 0.72 0.466403
Target:  5'- cCCGCaCGUACU-GGCGCGacacaaacaccGGGCGUCUg -3'
miRNA:   3'- -GGCG-GCAUGAgCCGCGC-----------CUCGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 108819 0.66 0.843903
Target:  5'- cCCGUCGgcCUCGaCGUGGcccgugGGCGUCUg -3'
miRNA:   3'- -GGCGGCauGAGCcGCGCC------UCGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 109090 0.72 0.48475
Target:  5'- cCCGCCGacaacgGCUCGGCGCuGGAcGCc-CUCc -3'
miRNA:   3'- -GGCGGCa-----UGAGCCGCG-CCU-CGuaGAG- -5'
5402 5' -58.6 NC_001798.1 + 109439 0.68 0.699937
Target:  5'- cCCGCCugcgGCUggaGGCGCGccucGGGCAUCUg -3'
miRNA:   3'- -GGCGGca--UGAg--CCGCGC----CUCGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 110848 0.67 0.775804
Target:  5'- -gGCCGUGCUgGGCGCGaGccaGGCAa--- -3'
miRNA:   3'- ggCGGCAUGAgCCGCGC-C---UCGUagag -5'
5402 5' -58.6 NC_001798.1 + 111512 0.72 0.48475
Target:  5'- cUCGCgCGUcaaucccgACUCGGCGUGGGGCucCUCc -3'
miRNA:   3'- -GGCG-GCA--------UGAGCCGCGCCUCGuaGAG- -5'
5402 5' -58.6 NC_001798.1 + 111642 0.66 0.835955
Target:  5'- gCGUCGggggcGCUCGGCgGgGGGGCGgaagagacgCUCg -3'
miRNA:   3'- gGCGGCa----UGAGCCG-CgCCUCGUa--------GAG- -5'
5402 5' -58.6 NC_001798.1 + 115538 0.66 0.802475
Target:  5'- cCCgGCCGgcCcCGGCGCGGAcaugcagcaGCGUUUUc -3'
miRNA:   3'- -GG-CGGCauGaGCCGCGCCU---------CGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 120237 0.72 0.503434
Target:  5'- cCCGCCGagGC-CaGGaUGCGGuGCAUCUCg -3'
miRNA:   3'- -GGCGGCa-UGaG-CC-GCGCCuCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 124331 0.68 0.719398
Target:  5'- -gGCCGgga-CGGCGCGGAaaGCGUCa- -3'
miRNA:   3'- ggCGGCaugaGCCGCGCCU--CGUAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.