miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 153700 0.67 0.766658
Target:  5'- gCCGCCGgcgcagGCUCaGGCGCGccaGGUA-CUCc -3'
miRNA:   3'- -GGCGGCa-----UGAG-CCGCGCc--UCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 150424 0.67 0.784827
Target:  5'- gCGgCGg---CGGCGCGGGGCGgaCUCc -3'
miRNA:   3'- gGCgGCaugaGCCGCGCCUCGUa-GAG- -5'
5402 5' -58.6 NC_001798.1 + 149437 0.66 0.843903
Target:  5'- gCGCgCGUGCUCGGgGagcaGGGuGCGgcggCUCc -3'
miRNA:   3'- gGCG-GCAUGAGCCgCg---CCU-CGUa---GAG- -5'
5402 5' -58.6 NC_001798.1 + 149254 0.69 0.670361
Target:  5'- gUCGCCG-GC-CGGCGCGGGcGCGcccugCUCc -3'
miRNA:   3'- -GGCGGCaUGaGCCGCGCCU-CGUa----GAG- -5'
5402 5' -58.6 NC_001798.1 + 139346 0.66 0.828651
Target:  5'- gCGCUGUGCggccauggcggcgucCGGCGgGGAGgG-CUCg -3'
miRNA:   3'- gGCGGCAUGa--------------GCCGCgCCUCgUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 135951 0.66 0.827831
Target:  5'- gCGCCcUGCU-GGaCGCGGAGCAa--- -3'
miRNA:   3'- gGCGGcAUGAgCC-GCGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 135787 0.7 0.570997
Target:  5'- cCCGCCGgaggaggccgugUGCgCGGCcCGGGGCGUCa- -3'
miRNA:   3'- -GGCGGC------------AUGaGCCGcGCCUCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 134928 0.66 0.843903
Target:  5'- gCCGCCG-AgUCGGCgcgugaccugguGCGGGGCGc--- -3'
miRNA:   3'- -GGCGGCaUgAGCCG------------CGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 132690 0.69 0.670361
Target:  5'- aCGCCGacgcgGCgcaGGCGCGGGggucgcGCAUCUa -3'
miRNA:   3'- gGCGGCa----UGag-CCGCGCCU------CGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 132144 0.69 0.650483
Target:  5'- gCCGCCGgggGC-CGGCggGCGGGGCGc--- -3'
miRNA:   3'- -GGCGGCa--UGaGCCG--CGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 124331 0.68 0.719398
Target:  5'- -gGCCGgga-CGGCGCGGAaaGCGUCa- -3'
miRNA:   3'- ggCGGCaugaGCCGCGCCU--CGUAGag -5'
5402 5' -58.6 NC_001798.1 + 120237 0.72 0.503434
Target:  5'- cCCGCCGagGC-CaGGaUGCGGuGCAUCUCg -3'
miRNA:   3'- -GGCGGCa-UGaG-CC-GCGCCuCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 115538 0.66 0.802475
Target:  5'- cCCgGCCGgcCcCGGCGCGGAcaugcagcaGCGUUUUc -3'
miRNA:   3'- -GG-CGGCauGaGCCGCGCCU---------CGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 111642 0.66 0.835955
Target:  5'- gCGUCGggggcGCUCGGCgGgGGGGCGgaagagacgCUCg -3'
miRNA:   3'- gGCGGCa----UGAGCCG-CgCCUCGUa--------GAG- -5'
5402 5' -58.6 NC_001798.1 + 111512 0.72 0.48475
Target:  5'- cUCGCgCGUcaaucccgACUCGGCGUGGGGCucCUCc -3'
miRNA:   3'- -GGCG-GCA--------UGAGCCGCGCCUCGuaGAG- -5'
5402 5' -58.6 NC_001798.1 + 110848 0.67 0.775804
Target:  5'- -gGCCGUGCUgGGCGCGaGccaGGCAa--- -3'
miRNA:   3'- ggCGGCAUGAgCCGCGC-C---UCGUagag -5'
5402 5' -58.6 NC_001798.1 + 109439 0.68 0.699937
Target:  5'- cCCGCCugcgGCUggaGGCGCGccucGGGCAUCUg -3'
miRNA:   3'- -GGCGGca--UGAg--CCGCGC----CUCGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 109090 0.72 0.48475
Target:  5'- cCCGCCGacaacgGCUCGGCGCuGGAcGCc-CUCc -3'
miRNA:   3'- -GGCGGCa-----UGAGCCGCG-CCU-CGuaGAG- -5'
5402 5' -58.6 NC_001798.1 + 108819 0.66 0.843903
Target:  5'- cCCGUCGgcCUCGaCGUGGcccgugGGCGUCUg -3'
miRNA:   3'- -GGCGGCauGAGCcGCGCC------UCGUAGAg -5'
5402 5' -58.6 NC_001798.1 + 108219 0.72 0.466403
Target:  5'- cCCGCaCGUACU-GGCGCGacacaaacaccGGGCGUCUg -3'
miRNA:   3'- -GGCG-GCAUGAgCCGCGC-----------CUCGUAGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.