miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 107460 0.66 0.843903
Target:  5'- aCC-CCGaGgaCGGCGCGGGGUcUCUg -3'
miRNA:   3'- -GGcGGCaUgaGCCGCGCCUCGuAGAg -5'
5402 5' -58.6 NC_001798.1 + 102910 0.7 0.61062
Target:  5'- gCCGCCGccGCUCGGCcacaaggcuccaGCGGucacgcAGCAUCa- -3'
miRNA:   3'- -GGCGGCa-UGAGCCG------------CGCC------UCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 102807 0.67 0.77216
Target:  5'- gCGCCGguuuuauacccgcGCUcCGGCGCaGGGGCAgaCUCc -3'
miRNA:   3'- gGCGGCa------------UGA-GCCGCG-CCUCGUa-GAG- -5'
5402 5' -58.6 NC_001798.1 + 97242 0.68 0.709699
Target:  5'- gCGCUGUuCgggCGGCggGCGGAGCAcUUCg -3'
miRNA:   3'- gGCGGCAuGa--GCCG--CGCCUCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 96082 0.68 0.729026
Target:  5'- gCCGCCGcAUcagUCcGCGCGGGGCGcgcCUCu -3'
miRNA:   3'- -GGCGGCaUG---AGcCGCGCCUCGUa--GAG- -5'
5402 5' -58.6 NC_001798.1 + 91098 0.66 0.831101
Target:  5'- gCCGUCGUggaccccggugcgcuGCUCcGCG-GGGGCGUcCUCg -3'
miRNA:   3'- -GGCGGCA---------------UGAGcCGCgCCUCGUA-GAG- -5'
5402 5' -58.6 NC_001798.1 + 90698 0.68 0.719398
Target:  5'- gCCGCCGccaggcGCUCGcagagaucGCGCGGGGCAc--- -3'
miRNA:   3'- -GGCGGCa-----UGAGC--------CGCGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 88807 0.71 0.550431
Target:  5'- uCCGCCcagcgcgcgucacGUACgCGcGCGUcgcgaGGAGCAUCUCg -3'
miRNA:   3'- -GGCGG-------------CAUGaGC-CGCG-----CCUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 86892 0.72 0.48475
Target:  5'- gCCGCCGggaACccCGGCGUGGAGCGccgggcCUCc -3'
miRNA:   3'- -GGCGGCa--UGa-GCCGCGCCUCGUa-----GAG- -5'
5402 5' -58.6 NC_001798.1 + 85487 0.67 0.782133
Target:  5'- gCGCCaaGUGcCUgGGCGCGccccacugcgccgcGAGCAUCUUc -3'
miRNA:   3'- gGCGG--CAU-GAgCCGCGC--------------CUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 83253 0.67 0.784827
Target:  5'- cCCGCCGaggACUCacggGGUGCuGGGgGUCUUg -3'
miRNA:   3'- -GGCGGCa--UGAG----CCGCGcCUCgUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 81917 0.66 0.802475
Target:  5'- uCCGcCCGgccccgcCUCGGCucGCGGGGCcUUUCc -3'
miRNA:   3'- -GGC-GGCau-----GAGCCG--CGCCUCGuAGAG- -5'
5402 5' -58.6 NC_001798.1 + 79646 0.67 0.79372
Target:  5'- cCCgGCCGUcaccgacaaACUCGGCGCGcugcuGAuGCGUCcCg -3'
miRNA:   3'- -GG-CGGCA---------UGAGCCGCGC-----CU-CGUAGaG- -5'
5402 5' -58.6 NC_001798.1 + 77723 0.69 0.670361
Target:  5'- gCCGCCGgcguCgaggCGGCGCuGGAccGCGUCg- -3'
miRNA:   3'- -GGCGGCau--Ga---GCCGCG-CCU--CGUAGag -5'
5402 5' -58.6 NC_001798.1 + 75351 0.73 0.412805
Target:  5'- gUCGCCGUACcCGGCGCacccggggcuguuGGAGC-UCUg -3'
miRNA:   3'- -GGCGGCAUGaGCCGCG-------------CCUCGuAGAg -5'
5402 5' -58.6 NC_001798.1 + 68285 0.7 0.600674
Target:  5'- aCCGCCccaaaccGCUCGGUGCGGuGCAg--- -3'
miRNA:   3'- -GGCGGca-----UGAGCCGCGCCuCGUagag -5'
5402 5' -58.6 NC_001798.1 + 66759 0.66 0.802475
Target:  5'- uCCGCCugggGUGCggCGGCGUGG-GCcgCg- -3'
miRNA:   3'- -GGCGG----CAUGa-GCCGCGCCuCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 64773 0.66 0.827831
Target:  5'- -gGCCGUguuucaucauGCUCuGGCGU--AGCAUCUCc -3'
miRNA:   3'- ggCGGCA----------UGAG-CCGCGccUCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 62278 0.7 0.590751
Target:  5'- cCCGCCGggcgGCcCGGCG-GGAGCGcgccaaCUCg -3'
miRNA:   3'- -GGCGGCa---UGaGCCGCgCCUCGUa-----GAG- -5'
5402 5' -58.6 NC_001798.1 + 58688 0.72 0.502493
Target:  5'- gCCGCCGUcagggccGCggCGGCGCGGGG-GUCg- -3'
miRNA:   3'- -GGCGGCA-------UGa-GCCGCGCCUCgUAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.