miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 5' -58.6 NC_001798.1 + 58540 0.66 0.802475
Target:  5'- uCCGUgGUcuguuggccGCUCGGCGUccuccGGGGCGUaUCg -3'
miRNA:   3'- -GGCGgCA---------UGAGCCGCG-----CCUCGUAgAG- -5'
5402 5' -58.6 NC_001798.1 + 56047 0.71 0.561177
Target:  5'- aCCGCgGgcuugaauaUCGGgGCGGGGCGcUCUCu -3'
miRNA:   3'- -GGCGgCaug------AGCCgCGCCUCGU-AGAG- -5'
5402 5' -58.6 NC_001798.1 + 53418 0.66 0.819538
Target:  5'- gCCGCCaagcaggcGCUCGGCGagguGGAGCuGUCg- -3'
miRNA:   3'- -GGCGGca------UGAGCCGCg---CCUCG-UAGag -5'
5402 5' -58.6 NC_001798.1 + 52532 0.73 0.430832
Target:  5'- gCGCCGUGCU-GGCGaCGGGGC-UCa- -3'
miRNA:   3'- gGCGGCAUGAgCCGC-GCCUCGuAGag -5'
5402 5' -58.6 NC_001798.1 + 52415 0.73 0.457365
Target:  5'- aCGCCGUGCUgGGCGCGGccGUGUa-- -3'
miRNA:   3'- gGCGGCAUGAgCCGCGCCu-CGUAgag -5'
5402 5' -58.6 NC_001798.1 + 51940 0.68 0.690122
Target:  5'- gCCGCCGUgccgcuGCUCaGCGCGGgaggGGCcgCg- -3'
miRNA:   3'- -GGCGGCA------UGAGcCGCGCC----UCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 46340 0.67 0.784827
Target:  5'- gUCGCCGUGCUCGGUGgucaccuGCGUuagCUCg -3'
miRNA:   3'- -GGCGGCAUGAGCCGCgccu---CGUA---GAG- -5'
5402 5' -58.6 NC_001798.1 + 44975 0.66 0.811084
Target:  5'- uCCGCC---CUCGGagGCGGAGCcgCg- -3'
miRNA:   3'- -GGCGGcauGAGCCg-CGCCUCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 39544 0.69 0.650483
Target:  5'- cUCGCCGUGggUGGCGCcGGGGcCGUC-Cg -3'
miRNA:   3'- -GGCGGCAUgaGCCGCG-CCUC-GUAGaG- -5'
5402 5' -58.6 NC_001798.1 + 38969 0.66 0.803343
Target:  5'- gCCGCCGUuccgaugauagggucCUgGGgGCGGAGCggCa- -3'
miRNA:   3'- -GGCGGCAu--------------GAgCCgCGCCUCGuaGag -5'
5402 5' -58.6 NC_001798.1 + 36064 0.68 0.709699
Target:  5'- gCUGCCGgagGCUgCgGGCGCGGGGUAg--- -3'
miRNA:   3'- -GGCGGCa--UGA-G-CCGCGCCUCGUagag -5'
5402 5' -58.6 NC_001798.1 + 35579 0.67 0.784827
Target:  5'- cCCGCgGcgcUGCUCGGCuGCGGccGCGggCUCc -3'
miRNA:   3'- -GGCGgC---AUGAGCCG-CGCCu-CGUa-GAG- -5'
5402 5' -58.6 NC_001798.1 + 35531 0.82 0.131911
Target:  5'- uCCGCCGcgGC-CGGCGCGGGGCGUUg- -3'
miRNA:   3'- -GGCGGCa-UGaGCCGCGCCUCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 34572 0.67 0.784827
Target:  5'- cCCGgCGgacgGCUCa-CGCGGcgcGGCGUCUCg -3'
miRNA:   3'- -GGCgGCa---UGAGccGCGCC---UCGUAGAG- -5'
5402 5' -58.6 NC_001798.1 + 26344 0.72 0.475532
Target:  5'- aCGCCGUGCgcggCGGCccgGCGGAGCu---- -3'
miRNA:   3'- gGCGGCAUGa---GCCG---CGCCUCGuagag -5'
5402 5' -58.6 NC_001798.1 + 26176 0.67 0.748035
Target:  5'- gCGCCGUGCUccCGGCGCuGGAcggccgggccGCcgcCUCg -3'
miRNA:   3'- gGCGGCAUGA--GCCGCG-CCU----------CGua-GAG- -5'
5402 5' -58.6 NC_001798.1 + 25954 0.69 0.68026
Target:  5'- gCGCCGUGCgcuggccggCGGCGCGGGaccugcGCcgCa- -3'
miRNA:   3'- gGCGGCAUGa--------GCCGCGCCU------CGuaGag -5'
5402 5' -58.6 NC_001798.1 + 24449 0.7 0.600674
Target:  5'- cCCGCCG-GCUaCGGCGCcgcgGGGGUG-CUCg -3'
miRNA:   3'- -GGCGGCaUGA-GCCGCG----CCUCGUaGAG- -5'
5402 5' -58.6 NC_001798.1 + 22324 0.69 0.650483
Target:  5'- gCCGCCGccACggacgCGGaCGCGcGGGCGUCg- -3'
miRNA:   3'- -GGCGGCa-UGa----GCC-GCGC-CUCGUAGag -5'
5402 5' -58.6 NC_001798.1 + 21798 0.66 0.843903
Target:  5'- cCCGuCCGggcccgcCUCGGgGCGGAGCccgCg- -3'
miRNA:   3'- -GGC-GGCau-----GAGCCgCGCCUCGua-Gag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.