Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5402 | 5' | -58.6 | NC_001798.1 | + | 34572 | 0.67 | 0.784827 |
Target: 5'- cCCGgCGgacgGCUCa-CGCGGcgcGGCGUCUCg -3' miRNA: 3'- -GGCgGCa---UGAGccGCGCC---UCGUAGAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 35579 | 0.67 | 0.784827 |
Target: 5'- cCCGCgGcgcUGCUCGGCuGCGGccGCGggCUCc -3' miRNA: 3'- -GGCGgC---AUGAGCCG-CGCCu-CGUa-GAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 83253 | 0.67 | 0.784827 |
Target: 5'- cCCGCCGaggACUCacggGGUGCuGGGgGUCUUg -3' miRNA: 3'- -GGCGGCa--UGAG----CCGCGcCUCgUAGAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 15569 | 0.67 | 0.79372 |
Target: 5'- gCCGCCGccg-CGGCGgGGAGUggCg- -3' miRNA: 3'- -GGCGGCaugaGCCGCgCCUCGuaGag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 79646 | 0.67 | 0.79372 |
Target: 5'- cCCgGCCGUcaccgacaaACUCGGCGCGcugcuGAuGCGUCcCg -3' miRNA: 3'- -GG-CGGCA---------UGAGCCGCGC-----CU-CGUAGaG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 3190 | 0.66 | 0.802475 |
Target: 5'- gUCGUCGgccccgGC-CGGCGCGGAGgCGggcgcggcgCUCa -3' miRNA: 3'- -GGCGGCa-----UGaGCCGCGCCUC-GUa--------GAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 58540 | 0.66 | 0.802475 |
Target: 5'- uCCGUgGUcuguuggccGCUCGGCGUccuccGGGGCGUaUCg -3' miRNA: 3'- -GGCGgCA---------UGAGCCGCG-----CCUCGUAgAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 66759 | 0.66 | 0.802475 |
Target: 5'- uCCGCCugggGUGCggCGGCGUGG-GCcgCg- -3' miRNA: 3'- -GGCGG----CAUGa-GCCGCGCCuCGuaGag -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 81917 | 0.66 | 0.802475 |
Target: 5'- uCCGcCCGgccccgcCUCGGCucGCGGGGCcUUUCc -3' miRNA: 3'- -GGC-GGCau-----GAGCCG--CGCCUCGuAGAG- -5' |
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5402 | 5' | -58.6 | NC_001798.1 | + | 107460 | 0.66 | 0.843903 |
Target: 5'- aCC-CCGaGgaCGGCGCGGGGUcUCUg -3' miRNA: 3'- -GGcGGCaUgaGCCGCGCCUCGuAGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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