miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5405 3' -61.3 NC_001798.1 + 106087 0.66 0.676947
Target:  5'- -cUGgCGGUCGCGgcGACCCGGCgCCg -3'
miRNA:   3'- cuGCgGCCGGUGUguUUGGGCCG-GGa -5'
5405 3' -61.3 NC_001798.1 + 17084 0.66 0.676947
Target:  5'- cACGCCGgucggguccacGCCGgACGAuuguuCCCGGCCg- -3'
miRNA:   3'- cUGCGGC-----------CGGUgUGUUu----GGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 22843 0.66 0.676947
Target:  5'- -cCGCCGcCCACccCGAACCCGGaCCg -3'
miRNA:   3'- cuGCGGCcGGUGu-GUUUGGGCCgGGa -5'
5405 3' -61.3 NC_001798.1 + 134177 0.66 0.676947
Target:  5'- -cCGcCCGcGCCGCgACGGcCCCGGCCg- -3'
miRNA:   3'- cuGC-GGC-CGGUG-UGUUuGGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 70653 0.66 0.675964
Target:  5'- -cUGCCuGGCCAugaaccCGCGGACCUcccuggaGGCCCUc -3'
miRNA:   3'- cuGCGG-CCGGU------GUGUUUGGG-------CCGGGA- -5'
5405 3' -61.3 NC_001798.1 + 144693 0.66 0.673996
Target:  5'- cGACGCagCGGCgagugcugaguaguCAaaguuUACAcACCCGGCCCUg -3'
miRNA:   3'- -CUGCG--GCCG--------------GU-----GUGUuUGGGCCGGGA- -5'
5405 3' -61.3 NC_001798.1 + 2701 0.66 0.667099
Target:  5'- --aGUCGGCCGCggcgACGGugUCGGCCa- -3'
miRNA:   3'- cugCGGCCGGUG----UGUUugGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 27995 0.66 0.667099
Target:  5'- --aGCCGuGCCGCGC---CCCGGCgCg -3'
miRNA:   3'- cugCGGC-CGGUGUGuuuGGGCCGgGa -5'
5405 3' -61.3 NC_001798.1 + 28719 0.66 0.667099
Target:  5'- cGAgGCCcgagcucgGGCCcgaGCcCGAGCCCGGgCCCa -3'
miRNA:   3'- -CUgCGG--------CCGG---UGuGUUUGGGCC-GGGa -5'
5405 3' -61.3 NC_001798.1 + 61906 0.66 0.667099
Target:  5'- --aGCCGGCCcUGC--GCCUGGCUCa -3'
miRNA:   3'- cugCGGCCGGuGUGuuUGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 94440 0.66 0.667099
Target:  5'- --gGCCGGCCAgACGGcCCCcGCCg- -3'
miRNA:   3'- cugCGGCCGGUgUGUUuGGGcCGGga -5'
5405 3' -61.3 NC_001798.1 + 114682 0.66 0.667099
Target:  5'- gGGCGCCuGGCgAC-CAGgguuGCCCGGgcgaCCCUg -3'
miRNA:   3'- -CUGCGG-CCGgUGuGUU----UGGGCC----GGGA- -5'
5405 3' -61.3 NC_001798.1 + 144058 0.66 0.667099
Target:  5'- aACGCCaGGCCGUGC--GCCUGGCCg- -3'
miRNA:   3'- cUGCGG-CCGGUGUGuuUGGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 25861 0.66 0.667099
Target:  5'- aACGCCGuGCgCGcCGCGGA-CUGGCCCg -3'
miRNA:   3'- cUGCGGC-CG-GU-GUGUUUgGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 153387 0.66 0.667099
Target:  5'- cGGCGCCGGaaCCGguCGcGgUCGGCCCg -3'
miRNA:   3'- -CUGCGGCC--GGUguGUuUgGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 88764 0.66 0.667099
Target:  5'- cAUGCCGGCCGCcuccGgAAAgUCGGCCa- -3'
miRNA:   3'- cUGCGGCCGGUG----UgUUUgGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 86156 0.66 0.657224
Target:  5'- -cCGCgGGgCGCGCAugcgcGACgCGGCCCc -3'
miRNA:   3'- cuGCGgCCgGUGUGU-----UUGgGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 97633 0.66 0.657224
Target:  5'- cGACGCgGGCCGcCGCGGACgugcgggagcgCCGGCg-- -3'
miRNA:   3'- -CUGCGgCCGGU-GUGUUUG-----------GGCCGgga -5'
5405 3' -61.3 NC_001798.1 + 109085 0.66 0.657224
Target:  5'- cGACGCCcGCCG-ACAAcgGCUCGGCgCUg -3'
miRNA:   3'- -CUGCGGcCGGUgUGUU--UGGGCCGgGA- -5'
5405 3' -61.3 NC_001798.1 + 54624 0.66 0.657224
Target:  5'- cGCGCCucccGCCcCGCAAcCCCGcGCCCc -3'
miRNA:   3'- cUGCGGc---CGGuGUGUUuGGGC-CGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.