Results 41 - 60 of 240 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5406 | 3' | -58.9 | NC_001798.1 | + | 97449 | 0.66 | 0.822071 |
Target: 5'- gCGCuGCgCCGCGuGCug-GCGCGGCUg- -3' miRNA: 3'- -GCG-CG-GGCGCuUGuugUGCGCCGAga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 116939 | 0.66 | 0.822071 |
Target: 5'- aCGCGCUguuUGCGGGCGccgacCACGUGGC-Ca -3' miRNA: 3'- -GCGCGG---GCGCUUGUu----GUGCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 145976 | 0.66 | 0.822071 |
Target: 5'- cCGCGCCCGCagccuccGGCAGCACGCc----- -3' miRNA: 3'- -GCGCGGGCGc------UUGUUGUGCGccgaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 142159 | 0.66 | 0.813641 |
Target: 5'- aCGUGUuuGagucagGGAC-GCGCGCGGUUCUg -3' miRNA: 3'- -GCGCGggCg-----CUUGuUGUGCGCCGAGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 136810 | 0.66 | 0.813641 |
Target: 5'- aCGCGCUCGaaGGGaGACGCGUGGCg-- -3' miRNA: 3'- -GCGCGGGCg-CUUgUUGUGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 131960 | 0.66 | 0.812789 |
Target: 5'- aCGUGCCCGCGGaucaucgccauggACGccaccgccaACGCGCaGCUg- -3' miRNA: 3'- -GCGCGGGCGCU-------------UGU---------UGUGCGcCGAga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 43057 | 0.66 | 0.813641 |
Target: 5'- gCGCGUgagCCGCcGGCcgAGCGCGCcgGGCUCg -3' miRNA: 3'- -GCGCG---GGCGcUUG--UUGUGCG--CCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 44237 | 0.66 | 0.813641 |
Target: 5'- uGCGCCCGaCGAcCGA-GCGCaucgauucgccgGGCUCa -3' miRNA: 3'- gCGCGGGC-GCUuGUUgUGCG------------CCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 46110 | 0.66 | 0.813641 |
Target: 5'- gCGUGCCCGgaGGGcCAGCGCGUaGGCa-- -3' miRNA: 3'- -GCGCGGGCg-CUU-GUUGUGCG-CCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 83670 | 0.66 | 0.813641 |
Target: 5'- gGCGUCUgggaugcacugGCGGGCGGgACGgUGGCUCg -3' miRNA: 3'- gCGCGGG-----------CGCUUGUUgUGC-GCCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 90786 | 0.66 | 0.813641 |
Target: 5'- gCGUGCCguagaCGUGAacgGCGACGCGaUGGCUUc -3' miRNA: 3'- -GCGCGG-----GCGCU---UGUUGUGC-GCCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 98202 | 0.66 | 0.813641 |
Target: 5'- aGCGCgCCGCcuGGCGAUAuauuCGCGaGCUCa -3' miRNA: 3'- gCGCG-GGCGc-UUGUUGU----GCGC-CGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 27254 | 0.66 | 0.813641 |
Target: 5'- gGCGgCCGCGGgaccGCAGCccCGUGGCg-- -3' miRNA: 3'- gCGCgGGCGCU----UGUUGu-GCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 27840 | 0.66 | 0.813641 |
Target: 5'- gCGUGCCgaGUGAACucucccgccccGACGCGCuccGGCUCc -3' miRNA: 3'- -GCGCGGg-CGCUUG-----------UUGUGCG---CCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 29650 | 0.66 | 0.813641 |
Target: 5'- cCG-GCaCUGCGAGCGACGgaGCGGCg-- -3' miRNA: 3'- -GCgCG-GGCGCUUGUUGUg-CGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 43101 | 0.66 | 0.813641 |
Target: 5'- cCGCGUCCGCGAccACGGuCGCuucCGGCg-- -3' miRNA: 3'- -GCGCGGGCGCU--UGUU-GUGc--GCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 69009 | 0.66 | 0.813641 |
Target: 5'- gGCGUCgCGCGcaucguaggcGGCGgcGCACGCGGC-Ca -3' miRNA: 3'- gCGCGG-GCGC----------UUGU--UGUGCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 134064 | 0.66 | 0.813641 |
Target: 5'- uCGCGaCgCCGCGGGgGaggcGCGCGCGcGCUUc -3' miRNA: 3'- -GCGC-G-GGCGCUUgU----UGUGCGC-CGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 86102 | 0.67 | 0.769292 |
Target: 5'- gCGCGCcgCCGCGGACGcccgccGCGCcGCGGUc-- -3' miRNA: 3'- -GCGCG--GGCGCUUGU------UGUG-CGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 52528 | 0.67 | 0.769292 |
Target: 5'- gCGCGCgCCGUGcuGGCG--ACGgGGCUCa -3' miRNA: 3'- -GCGCG-GGCGC--UUGUugUGCgCCGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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