miRNA display CGI


Results 61 - 80 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 53925 0.67 0.760039
Target:  5'- gCGgGCCCaGCG-GCAcCACG-GGCUCg -3'
miRNA:   3'- -GCgCGGG-CGCuUGUuGUGCgCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 21975 0.67 0.760039
Target:  5'- gCGgGCCC-CGGGCAGgGCGCcagcGCUCg -3'
miRNA:   3'- -GCgCGGGcGCUUGUUgUGCGc---CGAGa -5'
5406 3' -58.9 NC_001798.1 + 21838 0.67 0.760039
Target:  5'- gCGgGCCC-CGGGCAGgGCGCcaguGCUCg -3'
miRNA:   3'- -GCgCGGGcGCUUGUUgUGCGc---CGAGa -5'
5406 3' -58.9 NC_001798.1 + 133672 0.67 0.759107
Target:  5'- aGCGCCUGcCGGACGcacagacagcuguACGCGCuGCUg- -3'
miRNA:   3'- gCGCGGGC-GCUUGU-------------UGUGCGcCGAga -5'
5406 3' -58.9 NC_001798.1 + 112768 0.67 0.757242
Target:  5'- --aGCCCGCGGGgAGgGCggacgcacggauguGCGGCUCg -3'
miRNA:   3'- gcgCGGGCGCUUgUUgUG--------------CGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 75931 0.67 0.754435
Target:  5'- -uCGCCCGCGGggucgacucggucucGCAGCGCGCcgGGCccCUg -3'
miRNA:   3'- gcGCGGGCGCU---------------UGUUGUGCG--CCGa-GA- -5'
5406 3' -58.9 NC_001798.1 + 46197 0.67 0.750678
Target:  5'- cCGuCGgCCGCGcGCAAUACGCGGa--- -3'
miRNA:   3'- -GC-GCgGGCGCuUGUUGUGCGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 1262 0.67 0.750678
Target:  5'- cCGCGUCCGCGucgucgcGCAGCACcaGCGGg--- -3'
miRNA:   3'- -GCGCGGGCGCu------UGUUGUG--CGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 83782 0.67 0.760039
Target:  5'- aGCGCCgGgGGGCccgGACGCGgGGCcCg -3'
miRNA:   3'- gCGCGGgCgCUUG---UUGUGCgCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 85502 0.67 0.760039
Target:  5'- gCGCGCCCcacugcgccGCGAGCAucuuCGUGGC-Cg -3'
miRNA:   3'- -GCGCGGG---------CGCUUGUugu-GCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 86102 0.67 0.769292
Target:  5'- gCGCGCcgCCGCGGACGcccgccGCGCcGCGGUc-- -3'
miRNA:   3'- -GCGCG--GGCGCUUGU------UGUG-CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 52528 0.67 0.769292
Target:  5'- gCGCGCgCCGUGcuGGCG--ACGgGGCUCa -3'
miRNA:   3'- -GCGCG-GGCGC--UUGUugUGCgCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 35577 0.67 0.769292
Target:  5'- --aGCCCGCGGcgcugcucggcuGCGGC-CGCgGGCUCc -3'
miRNA:   3'- gcgCGGGCGCU------------UGUUGuGCG-CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 69951 0.67 0.768372
Target:  5'- cCGCGCCuuCGCGGcguacuuGCGACACGCccggGGUUUc -3'
miRNA:   3'- -GCGCGG--GCGCU-------UGUUGUGCG----CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 92962 0.67 0.763753
Target:  5'- gCGUGCCCG-GAACGuggacgccguggccCGCGCGGC-Cg -3'
miRNA:   3'- -GCGCGGGCgCUUGUu-------------GUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 153801 0.67 0.760039
Target:  5'- gGCGgCgGCGGGgGGCAgGCGGCg-- -3'
miRNA:   3'- gCGCgGgCGCUUgUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 150359 0.67 0.760039
Target:  5'- gCGCGUCCaccggcacgGCGGGCGGCGCG-GGCcCg -3'
miRNA:   3'- -GCGCGGG---------CGCUUGUUGUGCgCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 118606 0.67 0.760039
Target:  5'- uCGCGCCC-CGAu--GC-CGCGGCgCUg -3'
miRNA:   3'- -GCGCGGGcGCUuguUGuGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 111810 0.67 0.760039
Target:  5'- uGCGCCgguCGCGGGCGuccaggggcugGCGCGgGGCg-- -3'
miRNA:   3'- gCGCGG---GCGCUUGU-----------UGUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 41664 0.67 0.750678
Target:  5'- aGCGgaCCGCGAGCAugGCGUGcccGCaUCg -3'
miRNA:   3'- gCGCg-GGCGCUUGUugUGCGC---CG-AGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.