miRNA display CGI


Results 101 - 120 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 64220 0.67 0.760039
Target:  5'- aGCGCUguUGCuuACAGCGCGCaGCUUg -3'
miRNA:   3'- gCGCGG--GCGcuUGUUGUGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 71414 0.67 0.760039
Target:  5'- gGUGCCCGCGcgGACGccccccggcCACG-GGCUCa -3'
miRNA:   3'- gCGCGGGCGC--UUGUu--------GUGCgCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 96968 0.68 0.682845
Target:  5'- gGCGCUggCGCGGaccGCGGCGgGCGGCg-- -3'
miRNA:   3'- gCGCGG--GCGCU---UGUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 90557 0.68 0.682845
Target:  5'- gCGCGCCCGCuucGCAcgaAgACGCGGUa-- -3'
miRNA:   3'- -GCGCGGGCGcu-UGU---UgUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 42214 0.68 0.682845
Target:  5'- aGCG-CCGCGGGuCGGCguGCGCGGCg-- -3'
miRNA:   3'- gCGCgGGCGCUU-GUUG--UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 19407 0.68 0.682845
Target:  5'- aGCGCCCGUGuuuuACGuGCAUGgGGCg-- -3'
miRNA:   3'- gCGCGGGCGCu---UGU-UGUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 3656 0.68 0.682845
Target:  5'- aGCGCCaCGUccccGGGCGccACGCGCgGGUUCUg -3'
miRNA:   3'- gCGCGG-GCG----CUUGU--UGUGCG-CCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 29534 0.68 0.672928
Target:  5'- cCGCcCCCGCc-GgGGCGCGCGGCUa- -3'
miRNA:   3'- -GCGcGGGCGcuUgUUGUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 139335 0.68 0.672928
Target:  5'- gGCGCCCGCGcGCGcUGUGCGGC-Ca -3'
miRNA:   3'- gCGCGGGCGCuUGUuGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 82171 0.68 0.672928
Target:  5'- aCGCGgCCGCGGuuuccgccGCAGCG-GCGGCa-- -3'
miRNA:   3'- -GCGCgGGCGCU--------UGUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 113609 0.68 0.691737
Target:  5'- cCGCGCCCGUucucuggGAAUcGCcuGCGCGGC-Cg -3'
miRNA:   3'- -GCGCGGGCG-------CUUGuUG--UGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 2631 0.68 0.692722
Target:  5'- gGCGCCC-UGGcCGGgGCGgGGCUCUu -3'
miRNA:   3'- gCGCGGGcGCUuGUUgUGCgCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 9166 0.68 0.712324
Target:  5'- cCGCGCCgGgGGGCAGggucuCugGCGGgUCc -3'
miRNA:   3'- -GCGCGGgCgCUUGUU-----GugCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 115125 0.68 0.712324
Target:  5'- aGCGCCCcccaGACAACGCGCGuGCg-- -3'
miRNA:   3'- gCGCGGGcgc-UUGUUGUGCGC-CGaga -5'
5406 3' -58.9 NC_001798.1 + 105198 0.68 0.712324
Target:  5'- gGgGCCCGCGGugGGCGa-CGGCgCUg -3'
miRNA:   3'- gCgCGGGCGCUugUUGUgcGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 117769 0.68 0.692722
Target:  5'- uCGCGgccacggccaaCCCGUGGGCGuCGCaGCGGUUCUc -3'
miRNA:   3'- -GCGC-----------GGGCGCUUGUuGUG-CGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 74477 0.68 0.692722
Target:  5'- -cCGUUCGuCGAGCGGCGCGUGGCcaUCa -3'
miRNA:   3'- gcGCGGGC-GCUUGUUGUGCGCCG--AGa -5'
5406 3' -58.9 NC_001798.1 + 85241 0.68 0.692722
Target:  5'- uCGCGCCCGCccccccGCGGcCGCGCGGggCc -3'
miRNA:   3'- -GCGCGGGCGcu----UGUU-GUGCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 2990 0.68 0.692722
Target:  5'- gGCcgGCCCGCGGGCcccgggcgcgGGgGCGCGGCg-- -3'
miRNA:   3'- gCG--CGGGCGCUUG----------UUgUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 23885 0.68 0.672928
Target:  5'- gGCGCCCgagGCGGAgGAgGCGCGGg--- -3'
miRNA:   3'- gCGCGGG---CGCUUgUUgUGCGCCgaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.