miRNA display CGI


Results 121 - 140 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 105198 0.68 0.712324
Target:  5'- gGgGCCCGCGGugGGCGa-CGGCgCUg -3'
miRNA:   3'- gCgCGGGCGCUugUUGUgcGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 117769 0.68 0.692722
Target:  5'- uCGCGgccacggccaaCCCGUGGGCGuCGCaGCGGUUCUc -3'
miRNA:   3'- -GCGC-----------GGGCGCUUGUuGUG-CGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 74477 0.68 0.692722
Target:  5'- -cCGUUCGuCGAGCGGCGCGUGGCcaUCa -3'
miRNA:   3'- gcGCGGGC-GCUUGUUGUGCGCCG--AGa -5'
5406 3' -58.9 NC_001798.1 + 85241 0.68 0.692722
Target:  5'- uCGCGCCCGCccccccGCGGcCGCGCGGggCc -3'
miRNA:   3'- -GCGCGGGCGcu----UGUU-GUGCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 2990 0.68 0.692722
Target:  5'- gGCcgGCCCGCGGGCcccgggcgcgGGgGCGCGGCg-- -3'
miRNA:   3'- gCG--CGGGCGCUUG----------UUgUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 42214 0.68 0.682845
Target:  5'- aGCG-CCGCGGGuCGGCguGCGCGGCg-- -3'
miRNA:   3'- gCGCgGGCGCUU-GUUG--UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 90557 0.68 0.682845
Target:  5'- gCGCGCCCGCuucGCAcgaAgACGCGGUa-- -3'
miRNA:   3'- -GCGCGGGCGcu-UGU---UgUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 96968 0.68 0.682845
Target:  5'- gGCGCUggCGCGGaccGCGGCGgGCGGCg-- -3'
miRNA:   3'- gCGCGG--GCGCU---UGUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 113609 0.68 0.691737
Target:  5'- cCGCGCCCGUucucuggGAAUcGCcuGCGCGGC-Cg -3'
miRNA:   3'- -GCGCGGGCG-------CUUGuUG--UGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 2631 0.68 0.692722
Target:  5'- gGCGCCC-UGGcCGGgGCGgGGCUCUu -3'
miRNA:   3'- gCGCGGGcGCUuGUUgUGCgCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 133046 0.69 0.643017
Target:  5'- uCGCGCUcaugCGCGGccucaACAgccuggucggccGCACGCGGUUCa -3'
miRNA:   3'- -GCGCGG----GCGCU-----UGU------------UGUGCGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 150570 0.69 0.643017
Target:  5'- gGgGCCCGCgGGGCGGCGCGgagaCGGCg-- -3'
miRNA:   3'- gCgCGGGCG-CUUGUUGUGC----GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 84692 0.69 0.652008
Target:  5'- uCGCGCUUucggGCGAGCAgcucgccgugcacGCACGCGGUg-- -3'
miRNA:   3'- -GCGCGGG----CGCUUGU-------------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 92562 0.69 0.652008
Target:  5'- gCGCGCCCgcauuuuggcuucGCGGACuACGCGCcccGGCcCUg -3'
miRNA:   3'- -GCGCGGG-------------CGCUUGuUGUGCG---CCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 22100 0.69 0.653006
Target:  5'- aGcCGCCCGCGGACca-ACGgGGCg-- -3'
miRNA:   3'- gC-GCGGGCGCUUGuugUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 61894 0.69 0.653006
Target:  5'- gCGCGCCCuCGAAgcCGGCccuGCGCcuGGCUCa -3'
miRNA:   3'- -GCGCGGGcGCUU--GUUG---UGCG--CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 134657 0.69 0.653006
Target:  5'- uGCGgcCCCGCGGACAcccGCA-GCGGgUCa -3'
miRNA:   3'- gCGC--GGGCGCUUGU---UGUgCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 135022 0.69 0.653006
Target:  5'- uGCcCCCGCGGGCAugGC-CGGC-Cg -3'
miRNA:   3'- gCGcGGGCGCUUGUugUGcGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 52788 0.69 0.656997
Target:  5'- gGCGCCCGUGAGCGGgACGgcagaccccgccuucCuGCUCg -3'
miRNA:   3'- gCGCGGGCGCUUGUUgUGC---------------GcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 79862 0.69 0.643017
Target:  5'- gGCGCCU-CGAugGACGCGgCGGC-Cg -3'
miRNA:   3'- gCGCGGGcGCUugUUGUGC-GCCGaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.