Results 141 - 160 of 240 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5406 | 3' | -58.9 | NC_001798.1 | + | 143790 | 0.69 | 0.617027 |
Target: 5'- gGCGCCCcagaGCauaaagaccaggcccGGGCGGCGCGCGGC-Ca -3' miRNA: 3'- gCGCGGG----CG---------------CUUGUUGUGCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 116044 | 0.69 | 0.613032 |
Target: 5'- gGCGUUCGUGAACGACuacuCGCuGGuCUCg -3' miRNA: 3'- gCGCGGGCGCUUGUUGu---GCG-CC-GAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 47575 | 0.69 | 0.613032 |
Target: 5'- uCGUGUCCGCGGgaaGCGcCGCGCGGgaCc -3' miRNA: 3'- -GCGCGGGCGCU---UGUuGUGCGCCgaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 28788 | 0.69 | 0.613032 |
Target: 5'- gGCGgCgGCG-GCGGCGCGCGGgUCc -3' miRNA: 3'- gCGCgGgCGCuUGUUGUGCGCCgAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 77240 | 0.69 | 0.632021 |
Target: 5'- gGCGCCCugGCGGACGcggugucggcccuGgGCGCGGC-Cg -3' miRNA: 3'- gCGCGGG--CGCUUGU-------------UgUGCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 51485 | 0.69 | 0.63302 |
Target: 5'- uCGgGCCCG-GAGCuGCAgGCGGCa-- -3' miRNA: 3'- -GCgCGGGCgCUUGuUGUgCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 124978 | 0.69 | 0.63302 |
Target: 5'- cCGCGugguCCC-CGAGCAGCACGgCGGC-Ca -3' miRNA: 3'- -GCGC----GGGcGCUUGUUGUGC-GCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 52788 | 0.69 | 0.656997 |
Target: 5'- gGCGCCCGUGAGCGGgACGgcagaccccgccuucCuGCUCg -3' miRNA: 3'- gCGCGGGCGCUUGUUgUGC---------------GcCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 135022 | 0.69 | 0.653006 |
Target: 5'- uGCcCCCGCGGGCAugGC-CGGC-Cg -3' miRNA: 3'- gCGcGGGCGCUUGUugUGcGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 134657 | 0.69 | 0.653006 |
Target: 5'- uGCGgcCCCGCGGACAcccGCA-GCGGgUCa -3' miRNA: 3'- gCGC--GGGCGCUUGU---UGUgCGCCgAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 61894 | 0.69 | 0.653006 |
Target: 5'- gCGCGCCCuCGAAgcCGGCccuGCGCcuGGCUCa -3' miRNA: 3'- -GCGCGGGcGCUU--GUUG---UGCG--CCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 22100 | 0.69 | 0.653006 |
Target: 5'- aGcCGCCCGCGGACca-ACGgGGCg-- -3' miRNA: 3'- gC-GCGGGCGCUUGuugUGCgCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 92562 | 0.69 | 0.652008 |
Target: 5'- gCGCGCCCgcauuuuggcuucGCGGACuACGCGCcccGGCcCUg -3' miRNA: 3'- -GCGCGGG-------------CGCUUGuUGUGCG---CCGaGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 84692 | 0.69 | 0.652008 |
Target: 5'- uCGCGCUUucggGCGAGCAgcucgccgugcacGCACGCGGUg-- -3' miRNA: 3'- -GCGCGGG----CGCUUGU-------------UGUGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 150570 | 0.69 | 0.643017 |
Target: 5'- gGgGCCCGCgGGGCGGCGCGgagaCGGCg-- -3' miRNA: 3'- gCgCGGGCG-CUUGUUGUGC----GCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 133046 | 0.69 | 0.643017 |
Target: 5'- uCGCGCUcaugCGCGGccucaACAgccuggucggccGCACGCGGUUCa -3' miRNA: 3'- -GCGCGG----GCGCU-----UGU------------UGUGCGCCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 79862 | 0.69 | 0.643017 |
Target: 5'- gGCGCCU-CGAugGACGCGgCGGC-Cg -3' miRNA: 3'- gCGCGGGcGCUugUUGUGC-GCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 47875 | 0.69 | 0.643017 |
Target: 5'- gGCGCCgGCGGGCGcucGCACGCccCUCc -3' miRNA: 3'- gCGCGGgCGCUUGU---UGUGCGccGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 82366 | 0.69 | 0.63302 |
Target: 5'- -cCGCCgCGCGGACGcgcaucCGCGCGcGCUCg -3' miRNA: 3'- gcGCGG-GCGCUUGUu-----GUGCGC-CGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 153419 | 0.69 | 0.63302 |
Target: 5'- gCGCGCCCaggacccccGuCGGGCcaGGCGCGCGGCcgUCUc -3' miRNA: 3'- -GCGCGGG---------C-GCUUG--UUGUGCGCCG--AGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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