miRNA display CGI


Results 61 - 80 of 240 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 78134 0.7 0.593098
Target:  5'- gGCGCCUgGCGGACGACAUGaCGaGCg-- -3'
miRNA:   3'- gCGCGGG-CGCUUGUUGUGC-GC-CGaga -5'
5406 3' -58.9 NC_001798.1 + 31646 0.7 0.583168
Target:  5'- gGUGUCUGCGAGCGcGgACGCGGC-Cg -3'
miRNA:   3'- gCGCGGGCGCUUGU-UgUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 24282 0.7 0.583168
Target:  5'- aCGCGCCCcugcugGCGcGCGAgaACGCGGCgCUg -3'
miRNA:   3'- -GCGCGGG------CGCuUGUUg-UGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 100061 0.7 0.543847
Target:  5'- aGCGCCaCGUGAAUGACAUGCuggGGCg-- -3'
miRNA:   3'- gCGCGG-GCGCUUGUUGUGCG---CCGaga -5'
5406 3' -58.9 NC_001798.1 + 24816 0.7 0.553606
Target:  5'- uGCGCCUGCGcgggGACcuGCGCGUGGC-Cg -3'
miRNA:   3'- gCGCGGGCGC----UUGu-UGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 222 0.7 0.553606
Target:  5'- cCGCGCCCGCccc---CGCGCGGCa-- -3'
miRNA:   3'- -GCGCGGGCGcuuguuGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 77695 0.7 0.573273
Target:  5'- gCGCGCCCG-GGGCAGCA-GCGaGCgCUg -3'
miRNA:   3'- -GCGCGGGCgCUUGUUGUgCGC-CGaGA- -5'
5406 3' -58.9 NC_001798.1 + 88830 0.7 0.573273
Target:  5'- gCGCGCgUCGCGAGgAGCAucuCGCGGC-Cg -3'
miRNA:   3'- -GCGCG-GGCGCUUgUUGU---GCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 118089 0.7 0.583168
Target:  5'- aGCGCCCGCGAugGggaggcccACGCGCGa---- -3'
miRNA:   3'- gCGCGGGCGCUugU--------UGUGCGCcgaga -5'
5406 3' -58.9 NC_001798.1 + 64899 0.7 0.543847
Target:  5'- aCGCGcCCCGCGAacgcACAGCGCGUuacuGGUcuUCa -3'
miRNA:   3'- -GCGC-GGGCGCU----UGUUGUGCG----CCG--AGa -5'
5406 3' -58.9 NC_001798.1 + 131339 0.7 0.573273
Target:  5'- cCGCGCCC-CGGgcGCGACgucggcgcccgGCGCGGcCUCg -3'
miRNA:   3'- -GCGCGGGcGCU--UGUUG-----------UGCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 134446 0.7 0.553606
Target:  5'- gCGCGCgUCGcCGAGCAccccgGCGCGCGGUUg- -3'
miRNA:   3'- -GCGCG-GGC-GCUUGU-----UGUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 121067 0.7 0.563417
Target:  5'- uGCGCCCGCGGGCcccgagGACGCGCacacGCa-- -3'
miRNA:   3'- gCGCGGGCGCUUG------UUGUGCGc---CGaga -5'
5406 3' -58.9 NC_001798.1 + 28377 0.7 0.563417
Target:  5'- -cCGCCCGCGGACGcgcCGCGCGGg--- -3'
miRNA:   3'- gcGCGGGCGCUUGUu--GUGCGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 135022 0.69 0.653006
Target:  5'- uGCcCCCGCGGGCAugGC-CGGC-Cg -3'
miRNA:   3'- gCGcGGGCGCUUGUugUGcGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 22100 0.69 0.653006
Target:  5'- aGcCGCCCGCGGACca-ACGgGGCg-- -3'
miRNA:   3'- gC-GCGGGCGCUUGuugUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 95522 0.69 0.656997
Target:  5'- cCGCGCCCuggagcGCGGGCAugGCgaguggucgaccgacGCGGCcCUg -3'
miRNA:   3'- -GCGCGGG------CGCUUGUugUG---------------CGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 84692 0.69 0.652008
Target:  5'- uCGCGCUUucggGCGAGCAgcucgccgugcacGCACGCGGUg-- -3'
miRNA:   3'- -GCGCGGG----CGCUUGU-------------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 61894 0.69 0.653006
Target:  5'- gCGCGCCCuCGAAgcCGGCccuGCGCcuGGCUCa -3'
miRNA:   3'- -GCGCGGGcGCUU--GUUG---UGCG--CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 134657 0.69 0.653006
Target:  5'- uGCGgcCCCGCGGACAcccGCA-GCGGgUCa -3'
miRNA:   3'- gCGC--GGGCGCUUGU---UGUgCGCCgAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.