miRNA display CGI


Results 81 - 100 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 95522 0.69 0.656997
Target:  5'- cCGCGCCCuggagcGCGGGCAugGCgaguggucgaccgacGCGGCcCUg -3'
miRNA:   3'- -GCGCGGG------CGCUUGUugUG---------------CGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 32381 0.69 0.623023
Target:  5'- gGgGCCCGCGAccCGGCGCcCGGcCUCa -3'
miRNA:   3'- gCgCGGGCGCUu-GUUGUGcGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 108893 0.69 0.623023
Target:  5'- uGCGCgCGCGAuacgggaaggGCuuCAUGgGGCUCg -3'
miRNA:   3'- gCGCGgGCGCU----------UGuuGUGCgCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 22100 0.69 0.653006
Target:  5'- aGcCGCCCGCGGACca-ACGgGGCg-- -3'
miRNA:   3'- gC-GCGGGCGCUUGuugUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 142694 0.69 0.623023
Target:  5'- -cCGCCCGCuuGCAuauucccuuGCGCGCGGCg-- -3'
miRNA:   3'- gcGCGGGCGcuUGU---------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 61894 0.69 0.653006
Target:  5'- gCGCGCCCuCGAAgcCGGCccuGCGCcuGGCUCa -3'
miRNA:   3'- -GCGCGGGcGCUU--GUUG---UGCG--CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 122830 0.69 0.623023
Target:  5'- gGCGgUCGgGGGCGGCgGCgGCGGCUCg -3'
miRNA:   3'- gCGCgGGCgCUUGUUG-UG-CGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 143790 0.69 0.617027
Target:  5'- gGCGCCCcagaGCauaaagaccaggcccGGGCGGCGCGCGGC-Ca -3'
miRNA:   3'- gCGCGGG----CG---------------CUUGUUGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 47875 0.69 0.643017
Target:  5'- gGCGCCgGCGGGCGcucGCACGCccCUCc -3'
miRNA:   3'- gCGCGGgCGCUUGU---UGUGCGccGAGa -5'
5406 3' -58.9 NC_001798.1 + 32787 0.69 0.623023
Target:  5'- gCGCGCCCGCGccggccGGCGACGCccccGCGGg--- -3'
miRNA:   3'- -GCGCGGGCGC------UUGUUGUG----CGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 147543 0.69 0.623023
Target:  5'- gCGCGCCCcuCGAACGcCGCGCGuuCUCg -3'
miRNA:   3'- -GCGCGGGc-GCUUGUuGUGCGCc-GAGa -5'
5406 3' -58.9 NC_001798.1 + 102444 0.69 0.623023
Target:  5'- gGgGCCCGCGAACAGCAUaccCGGgUa- -3'
miRNA:   3'- gCgCGGGCGCUUGUUGUGc--GCCgAga -5'
5406 3' -58.9 NC_001798.1 + 126031 0.69 0.623023
Target:  5'- cCGCGCUUaGCGAGCGccuGgACGCGGCg-- -3'
miRNA:   3'- -GCGCGGG-CGCUUGU---UgUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 150451 0.69 0.623023
Target:  5'- aCGCGCggggcgacggCCGCGcGGgGGCGCGCGGCg-- -3'
miRNA:   3'- -GCGCG----------GGCGC-UUgUUGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 51485 0.69 0.63302
Target:  5'- uCGgGCCCG-GAGCuGCAgGCGGCa-- -3'
miRNA:   3'- -GCgCGGGCgCUUGuUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 124978 0.69 0.63302
Target:  5'- cCGCGugguCCC-CGAGCAGCACGgCGGC-Ca -3'
miRNA:   3'- -GCGC----GGGcGCUUGUUGUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 79862 0.69 0.643017
Target:  5'- gGCGCCU-CGAugGACGCGgCGGC-Cg -3'
miRNA:   3'- gCGCGGGcGCUugUUGUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 150570 0.69 0.643017
Target:  5'- gGgGCCCGCgGGGCGGCGCGgagaCGGCg-- -3'
miRNA:   3'- gCgCGGGCG-CUUGUUGUGC----GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 84692 0.69 0.652008
Target:  5'- uCGCGCUUucggGCGAGCAgcucgccgugcacGCACGCGGUg-- -3'
miRNA:   3'- -GCGCGGG----CGCUUGU-------------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 135022 0.69 0.653006
Target:  5'- uGCcCCCGCGGGCAugGC-CGGC-Cg -3'
miRNA:   3'- gCGcGGGCGCUUGUugUGcGCCGaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.