miRNA display CGI


Results 101 - 120 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 143790 0.69 0.617027
Target:  5'- gGCGCCCcagaGCauaaagaccaggcccGGGCGGCGCGCGGC-Ca -3'
miRNA:   3'- gCGCGGG----CG---------------CUUGUUGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 28788 0.69 0.613032
Target:  5'- gGCGgCgGCG-GCGGCGCGCGGgUCc -3'
miRNA:   3'- gCGCgGgCGCuUGUUGUGCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 116044 0.69 0.613032
Target:  5'- gGCGUUCGUGAACGACuacuCGCuGGuCUCg -3'
miRNA:   3'- gCGCGGGCGCUUGUUGu---GCG-CC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 106666 0.69 0.623023
Target:  5'- aCGCGCCUGCGuuCGGuCAgGCuGCUCg -3'
miRNA:   3'- -GCGCGGGCGCuuGUU-GUgCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 95522 0.69 0.656997
Target:  5'- cCGCGCCCuggagcGCGGGCAugGCgaguggucgaccgacGCGGCcCUg -3'
miRNA:   3'- -GCGCGGG------CGCUUGUugUG---------------CGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 134657 0.69 0.653006
Target:  5'- uGCGgcCCCGCGGACAcccGCA-GCGGgUCa -3'
miRNA:   3'- gCGC--GGGCGCUUGU---UGUgCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 61894 0.69 0.653006
Target:  5'- gCGCGCCCuCGAAgcCGGCccuGCGCcuGGCUCa -3'
miRNA:   3'- -GCGCGGGcGCUU--GUUG---UGCG--CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 116262 0.69 0.603055
Target:  5'- uCGUGUgggaCUGCGAcggccuuauGCGACACGCGGCcCUg -3'
miRNA:   3'- -GCGCG----GGCGCU---------UGUUGUGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 24710 0.69 0.603055
Target:  5'- cCGCGCCCGgGGcccGCGG-GCGCGGC-Cg -3'
miRNA:   3'- -GCGCGGGCgCU---UGUUgUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 121975 0.69 0.603055
Target:  5'- cCGCGCgCGCcccaAGCACGCGGcCUCc -3'
miRNA:   3'- -GCGCGgGCGcuugUUGUGCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 82171 0.68 0.672928
Target:  5'- aCGCGgCCGCGGuuuccgccGCAGCG-GCGGCa-- -3'
miRNA:   3'- -GCGCgGGCGCU--------UGUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 139335 0.68 0.672928
Target:  5'- gGCGCCCGCGcGCGcUGUGCGGC-Ca -3'
miRNA:   3'- gCGCGGGCGCuUGUuGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 29534 0.68 0.672928
Target:  5'- cCGCcCCCGCc-GgGGCGCGCGGCUa- -3'
miRNA:   3'- -GCGcGGGCGcuUgUUGUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 3656 0.68 0.682845
Target:  5'- aGCGCCaCGUccccGGGCGccACGCGCgGGUUCUg -3'
miRNA:   3'- gCGCGG-GCG----CUUGU--UGUGCG-CCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 19407 0.68 0.682845
Target:  5'- aGCGCCCGUGuuuuACGuGCAUGgGGCg-- -3'
miRNA:   3'- gCGCGGGCGCu---UGU-UGUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 42214 0.68 0.682845
Target:  5'- aGCG-CCGCGGGuCGGCguGCGCGGCg-- -3'
miRNA:   3'- gCGCgGGCGCUU-GUUG--UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 90557 0.68 0.682845
Target:  5'- gCGCGCCCGCuucGCAcgaAgACGCGGUa-- -3'
miRNA:   3'- -GCGCGGGCGcu-UGU---UgUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 96968 0.68 0.682845
Target:  5'- gGCGCUggCGCGGaccGCGGCGgGCGGCg-- -3'
miRNA:   3'- gCGCGG--GCGCU---UGUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 113609 0.68 0.691737
Target:  5'- cCGCGCCCGUucucuggGAAUcGCcuGCGCGGC-Cg -3'
miRNA:   3'- -GCGCGGGCG-------CUUGuUG--UGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 2631 0.68 0.692722
Target:  5'- gGCGCCC-UGGcCGGgGCGgGGCUCUu -3'
miRNA:   3'- gCGCGGGcGCUuGUUgUGCgCCGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.