miRNA display CGI


Results 61 - 80 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 28377 0.7 0.563417
Target:  5'- -cCGCCCGCGGACGcgcCGCGCGGg--- -3'
miRNA:   3'- gcGCGGGCGCUUGUu--GUGCGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 121067 0.7 0.563417
Target:  5'- uGCGCCCGCGGGCcccgagGACGCGCacacGCa-- -3'
miRNA:   3'- gCGCGGGCGCUUG------UUGUGCGc---CGaga -5'
5406 3' -58.9 NC_001798.1 + 133753 0.7 0.573273
Target:  5'- gCGCGCCCGCGug-GGgGCGCuGCUUg -3'
miRNA:   3'- -GCGCGGGCGCuugUUgUGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 54677 0.7 0.573273
Target:  5'- nCGCGCCCGCu-------CGCGGCUCa -3'
miRNA:   3'- -GCGCGGGCGcuuguuguGCGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 88830 0.7 0.573273
Target:  5'- gCGCGCgUCGCGAGgAGCAucuCGCGGC-Cg -3'
miRNA:   3'- -GCGCG-GGCGCUUgUUGU---GCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 131339 0.7 0.573273
Target:  5'- cCGCGCCC-CGGgcGCGACgucggcgcccgGCGCGGcCUCg -3'
miRNA:   3'- -GCGCGGGcGCU--UGUUG-----------UGCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 77695 0.7 0.573273
Target:  5'- gCGCGCCCG-GGGCAGCA-GCGaGCgCUg -3'
miRNA:   3'- -GCGCGGGCgCUUGUUGUgCGC-CGaGA- -5'
5406 3' -58.9 NC_001798.1 + 31573 0.7 0.573273
Target:  5'- gGCGCgCCGCGcGCcccCGCGCGGCcgUCg -3'
miRNA:   3'- gCGCG-GGCGCuUGuu-GUGCGCCG--AGa -5'
5406 3' -58.9 NC_001798.1 + 118089 0.7 0.583168
Target:  5'- aGCGCCCGCGAugGggaggcccACGCGCGa---- -3'
miRNA:   3'- gCGCGGGCGCUugU--------UGUGCGCcgaga -5'
5406 3' -58.9 NC_001798.1 + 24282 0.7 0.583168
Target:  5'- aCGCGCCCcugcugGCGcGCGAgaACGCGGCgCUg -3'
miRNA:   3'- -GCGCGGG------CGCuUGUUg-UGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 31646 0.7 0.583168
Target:  5'- gGUGUCUGCGAGCGcGgACGCGGC-Cg -3'
miRNA:   3'- gCGCGGGCGCUUGU-UgUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 1219 0.7 0.593098
Target:  5'- gCGCgGCCCGCGGcCGACGCccaGCGuaUCUg -3'
miRNA:   3'- -GCG-CGGGCGCUuGUUGUG---CGCcgAGA- -5'
5406 3' -58.9 NC_001798.1 + 78134 0.7 0.593098
Target:  5'- gGCGCCUgGCGGACGACAUGaCGaGCg-- -3'
miRNA:   3'- gCGCGGG-CGCUUGUUGUGC-GC-CGaga -5'
5406 3' -58.9 NC_001798.1 + 44931 0.7 0.597077
Target:  5'- aCGCGCCC-CGAggaacaACAAUAugagaugauucgggcCGCGGCUCc -3'
miRNA:   3'- -GCGCGGGcGCU------UGUUGU---------------GCGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 24710 0.69 0.603055
Target:  5'- cCGCGCCCGgGGcccGCGG-GCGCGGC-Cg -3'
miRNA:   3'- -GCGCGGGCgCU---UGUUgUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 31401 0.69 0.603055
Target:  5'- aCGCccCCCGCGAGaCAGCcccGCGCGGCcCa -3'
miRNA:   3'- -GCGc-GGGCGCUU-GUUG---UGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 76727 0.69 0.603055
Target:  5'- gCGCGCCCacgcccuggagGCGAugcucaACGACGCGCGGg--- -3'
miRNA:   3'- -GCGCGGG-----------CGCU------UGUUGUGCGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 116262 0.69 0.603055
Target:  5'- uCGUGUgggaCUGCGAcggccuuauGCGACACGCGGCcCUg -3'
miRNA:   3'- -GCGCG----GGCGCU---------UGUUGUGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 121975 0.69 0.603055
Target:  5'- cCGCGCgCGCcccaAGCACGCGGcCUCc -3'
miRNA:   3'- -GCGCGgGCGcuugUUGUGCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 116044 0.69 0.613032
Target:  5'- gGCGUUCGUGAACGACuacuCGCuGGuCUCg -3'
miRNA:   3'- gCGCGGGCGCUUGUUGu---GCG-CC-GAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.