miRNA display CGI


Results 101 - 120 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 133046 0.69 0.643017
Target:  5'- uCGCGCUcaugCGCGGccucaACAgccuggucggccGCACGCGGUUCa -3'
miRNA:   3'- -GCGCGG----GCGCU-----UGU------------UGUGCGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 150570 0.69 0.643017
Target:  5'- gGgGCCCGCgGGGCGGCGCGgagaCGGCg-- -3'
miRNA:   3'- gCgCGGGCG-CUUGUUGUGC----GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 92562 0.69 0.652008
Target:  5'- gCGCGCCCgcauuuuggcuucGCGGACuACGCGCcccGGCcCUg -3'
miRNA:   3'- -GCGCGGG-------------CGCUUGuUGUGCG---CCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 84692 0.69 0.652008
Target:  5'- uCGCGCUUucggGCGAGCAgcucgccgugcacGCACGCGGUg-- -3'
miRNA:   3'- -GCGCGGG----CGCUUGU-------------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 135022 0.69 0.653006
Target:  5'- uGCcCCCGCGGGCAugGC-CGGC-Cg -3'
miRNA:   3'- gCGcGGGCGCUUGUugUGcGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 134657 0.69 0.653006
Target:  5'- uGCGgcCCCGCGGACAcccGCA-GCGGgUCa -3'
miRNA:   3'- gCGC--GGGCGCUUGU---UGUgCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 61894 0.69 0.653006
Target:  5'- gCGCGCCCuCGAAgcCGGCccuGCGCcuGGCUCa -3'
miRNA:   3'- -GCGCGGGcGCUU--GUUG---UGCG--CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 22100 0.69 0.653006
Target:  5'- aGcCGCCCGCGGACca-ACGgGGCg-- -3'
miRNA:   3'- gC-GCGGGCGCUUGuugUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 95522 0.69 0.656997
Target:  5'- cCGCGCCCuggagcGCGGGCAugGCgaguggucgaccgacGCGGCcCUg -3'
miRNA:   3'- -GCGCGGG------CGCUUGUugUG---------------CGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 52788 0.69 0.656997
Target:  5'- gGCGCCCGUGAGCGGgACGgcagaccccgccuucCuGCUCg -3'
miRNA:   3'- gCGCGGGCGCUUGUUgUGC---------------GcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 25892 0.68 0.661982
Target:  5'- aCGgGCCCGUGGucucgcgGCAGCACGCcuaccuGGC-CUg -3'
miRNA:   3'- -GCgCGGGCGCU-------UGUUGUGCG------CCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 3263 0.68 0.662979
Target:  5'- cCGUaGCCgGCGGGCAcCGCGC-GCUCg -3'
miRNA:   3'- -GCG-CGGgCGCUUGUuGUGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 77856 0.68 0.662979
Target:  5'- gGCGCUCGCGGcCAACGCcgagGCGGUc-- -3'
miRNA:   3'- gCGCGGGCGCUuGUUGUG----CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 77800 0.68 0.662979
Target:  5'- gGCGCUgGCGGGC-ACGCaCGGCUa- -3'
miRNA:   3'- gCGCGGgCGCUUGuUGUGcGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 23936 0.68 0.662979
Target:  5'- gGCGCCCGUgugggcgccGAGCuggGCgACGCGGCg-- -3'
miRNA:   3'- gCGCGGGCG---------CUUGu--UG-UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 26582 0.68 0.662979
Target:  5'- gCGCgaGCCCGUGGACAugGaCGCGGagCUg -3'
miRNA:   3'- -GCG--CGGGCGCUUGUugU-GCGCCgaGA- -5'
5406 3' -58.9 NC_001798.1 + 26279 0.68 0.662979
Target:  5'- cCGCGCCUGCGcGCGcuggggccuggGCGCGCcGCUg- -3'
miRNA:   3'- -GCGCGGGCGCuUGU-----------UGUGCGcCGAga -5'
5406 3' -58.9 NC_001798.1 + 29534 0.68 0.672928
Target:  5'- cCGCcCCCGCc-GgGGCGCGCGGCUa- -3'
miRNA:   3'- -GCGcGGGCGcuUgUUGUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 139335 0.68 0.672928
Target:  5'- gGCGCCCGCGcGCGcUGUGCGGC-Ca -3'
miRNA:   3'- gCGCGGGCGCuUGUuGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 82171 0.68 0.672928
Target:  5'- aCGCGgCCGCGGuuuccgccGCAGCG-GCGGCa-- -3'
miRNA:   3'- -GCGCgGGCGCU--------UGUUGUgCGCCGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.