Results 101 - 120 of 240 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5406 | 3' | -58.9 | NC_001798.1 | + | 62449 | 0.67 | 0.722032 |
Target: 5'- aCGuCGCCgGUGGGCcGCGCGaCGGCg-- -3' miRNA: 3'- -GC-GCGGgCGCUUGuUGUGC-GCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 28115 | 0.67 | 0.721064 |
Target: 5'- gGUGCCCcagGCGGACGACagcgacgACGCGGaCUa- -3' miRNA: 3'- gCGCGGG---CGCUUGUUG-------UGCGCC-GAga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 105198 | 0.68 | 0.712324 |
Target: 5'- gGgGCCCGCGGugGGCGa-CGGCgCUg -3' miRNA: 3'- gCgCGGGCGCUugUUGUgcGCCGaGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 115125 | 0.68 | 0.712324 |
Target: 5'- aGCGCCCcccaGACAACGCGCGuGCg-- -3' miRNA: 3'- gCGCGGGcgc-UUGUUGUGCGC-CGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 9166 | 0.68 | 0.712324 |
Target: 5'- cCGCGCCgGgGGGCAGggucuCugGCGGgUCc -3' miRNA: 3'- -GCGCGGgCgCUUGUU-----GugCGCCgAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 138156 | 0.68 | 0.712324 |
Target: 5'- uCGCGCCCcCGGguccugggggcGCGACcCGCGGC-Cg -3' miRNA: 3'- -GCGCGGGcGCU-----------UGUUGuGCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 2631 | 0.68 | 0.692722 |
Target: 5'- gGCGCCC-UGGcCGGgGCGgGGCUCUu -3' miRNA: 3'- gCGCGGGcGCUuGUUgUGCgCCGAGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 2990 | 0.68 | 0.692722 |
Target: 5'- gGCcgGCCCGCGGGCcccgggcgcgGGgGCGCGGCg-- -3' miRNA: 3'- gCG--CGGGCGCUUG----------UUgUGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 85241 | 0.68 | 0.692722 |
Target: 5'- uCGCGCCCGCccccccGCGGcCGCGCGGggCc -3' miRNA: 3'- -GCGCGGGCGcu----UGUU-GUGCGCCgaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 74477 | 0.68 | 0.692722 |
Target: 5'- -cCGUUCGuCGAGCGGCGCGUGGCcaUCa -3' miRNA: 3'- gcGCGGGC-GCUUGUUGUGCGCCG--AGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 117769 | 0.68 | 0.692722 |
Target: 5'- uCGCGgccacggccaaCCCGUGGGCGuCGCaGCGGUUCUc -3' miRNA: 3'- -GCGC-----------GGGCGCUUGUuGUG-CGCCGAGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 113609 | 0.68 | 0.691737 |
Target: 5'- cCGCGCCCGUucucuggGAAUcGCcuGCGCGGC-Cg -3' miRNA: 3'- -GCGCGGGCG-------CUUGuUG--UGCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 3656 | 0.68 | 0.682845 |
Target: 5'- aGCGCCaCGUccccGGGCGccACGCGCgGGUUCUg -3' miRNA: 3'- gCGCGG-GCG----CUUGU--UGUGCG-CCGAGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 19407 | 0.68 | 0.682845 |
Target: 5'- aGCGCCCGUGuuuuACGuGCAUGgGGCg-- -3' miRNA: 3'- gCGCGGGCGCu---UGU-UGUGCgCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 42214 | 0.68 | 0.682845 |
Target: 5'- aGCG-CCGCGGGuCGGCguGCGCGGCg-- -3' miRNA: 3'- gCGCgGGCGCUU-GUUG--UGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 90557 | 0.68 | 0.682845 |
Target: 5'- gCGCGCCCGCuucGCAcgaAgACGCGGUa-- -3' miRNA: 3'- -GCGCGGGCGcu-UGU---UgUGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 96968 | 0.68 | 0.682845 |
Target: 5'- gGCGCUggCGCGGaccGCGGCGgGCGGCg-- -3' miRNA: 3'- gCGCGG--GCGCU---UGUUGUgCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 139335 | 0.68 | 0.672928 |
Target: 5'- gGCGCCCGCGcGCGcUGUGCGGC-Ca -3' miRNA: 3'- gCGCGGGCGCuUGUuGUGCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 82171 | 0.68 | 0.672928 |
Target: 5'- aCGCGgCCGCGGuuuccgccGCAGCG-GCGGCa-- -3' miRNA: 3'- -GCGCgGGCGCU--------UGUUGUgCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 23885 | 0.68 | 0.672928 |
Target: 5'- gGCGCCCgagGCGGAgGAgGCGCGGg--- -3' miRNA: 3'- gCGCGGG---CGCUUgUUgUGCGCCgaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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