miRNA display CGI


Results 61 - 80 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 31573 0.7 0.573273
Target:  5'- gGCGCgCCGCGcGCcccCGCGCGGCcgUCg -3'
miRNA:   3'- gCGCG-GGCGCuUGuu-GUGCGCCG--AGa -5'
5406 3' -58.9 NC_001798.1 + 31646 0.7 0.583168
Target:  5'- gGUGUCUGCGAGCGcGgACGCGGC-Cg -3'
miRNA:   3'- gCGCGGGCGCUUGU-UgUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 31699 0.67 0.741217
Target:  5'- aCGCGCaCCGCGcGCcccgguCGCGCaugacccaGGCUCa -3'
miRNA:   3'- -GCGCG-GGCGCuUGuu----GUGCG--------CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 32059 0.72 0.47648
Target:  5'- gGCGUCCGCGGGCGcCGCGCccccgucGGCgUCUc -3'
miRNA:   3'- gCGCGGGCGCUUGUuGUGCG-------CCG-AGA- -5'
5406 3' -58.9 NC_001798.1 + 32381 0.69 0.623023
Target:  5'- gGgGCCCGCGAccCGGCGCcCGGcCUCa -3'
miRNA:   3'- gCgCGGGCGCUu-GUUGUGcGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 32787 0.69 0.623023
Target:  5'- gCGCGCCCGCGccggccGGCGACGCccccGCGGg--- -3'
miRNA:   3'- -GCGCGGGCGC------UUGUUGUG----CGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 34565 0.66 0.822071
Target:  5'- uGgGUCCcccgGCGGACGGCucACGCGGCg-- -3'
miRNA:   3'- gCgCGGG----CGCUUGUUG--UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 34940 0.71 0.514933
Target:  5'- uCGCGCCuuuCGCGA---ACGCGCGGCg-- -3'
miRNA:   3'- -GCGCGG---GCGCUuguUGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 35328 0.66 0.786545
Target:  5'- gGCGCCCGCaaccgcaGAGCAcucaGCugGCGcGCc-- -3'
miRNA:   3'- gCGCGGGCG-------CUUGU----UGugCGC-CGaga -5'
5406 3' -58.9 NC_001798.1 + 35577 0.67 0.769292
Target:  5'- --aGCCCGCGGcgcugcucggcuGCGGC-CGCgGGCUCc -3'
miRNA:   3'- gcgCGGGCGCU------------UGUUGuGCG-CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 36233 0.75 0.32825
Target:  5'- cCGCGCCCGCGuuucuGCcGCcCGCGcGCUCc -3'
miRNA:   3'- -GCGCGGGCGCu----UGuUGuGCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 36497 0.71 0.486661
Target:  5'- gGCGCgaCGCGGGCGgccgggcggggGCGCGCGGCg-- -3'
miRNA:   3'- gCGCGg-GCGCUUGU-----------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 36543 0.67 0.750678
Target:  5'- gGCGCgCgGCGGccggGCGgggGCGCGCGGCg-- -3'
miRNA:   3'- gCGCG-GgCGCU----UGU---UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 36585 0.67 0.750678
Target:  5'- gGCGCgCgGCGGccggGCGgggGCGCGCGGCg-- -3'
miRNA:   3'- gCGCG-GgCGCU----UGU---UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 37196 0.76 0.280313
Target:  5'- gGCGCCgCGcCGAACGACggGCGCGGCg-- -3'
miRNA:   3'- gCGCGG-GC-GCUUGUUG--UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 41664 0.67 0.750678
Target:  5'- aGCGgaCCGCGAGCAugGCGUGcccGCaUCg -3'
miRNA:   3'- gCGCg-GGCGCUUGUugUGCGC---CG-AGa -5'
5406 3' -58.9 NC_001798.1 + 42214 0.68 0.682845
Target:  5'- aGCG-CCGCGGGuCGGCguGCGCGGCg-- -3'
miRNA:   3'- gCGCgGGCGCUU-GUUG--UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 42747 0.71 0.496006
Target:  5'- cCGuCGCCCGCacagacGGGCGGCGCGCGGggCc -3'
miRNA:   3'- -GC-GCGGGCG------CUUGUUGUGCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 43017 0.67 0.741217
Target:  5'- gGcCGCCCGgGGGgAGCGCGgGGCc-- -3'
miRNA:   3'- gC-GCGGGCgCUUgUUGUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 43057 0.66 0.813641
Target:  5'- gCGCGUgagCCGCcGGCcgAGCGCGCcgGGCUCg -3'
miRNA:   3'- -GCGCG---GGCGcUUG--UUGUGCG--CCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.