miRNA display CGI


Results 101 - 120 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 54677 0.7 0.573273
Target:  5'- nCGCGCCCGCu-------CGCGGCUCa -3'
miRNA:   3'- -GCGCGGGCGcuuguuguGCGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 56542 0.66 0.796318
Target:  5'- gGCGCCCGCacGAugucuGgGACGCGaCGGC-Ca -3'
miRNA:   3'- gCGCGGGCG--CU-----UgUUGUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 61894 0.69 0.653006
Target:  5'- gCGCGCCCuCGAAgcCGGCccuGCGCcuGGCUCa -3'
miRNA:   3'- -GCGCGGGcGCUU--GUUG---UGCG--CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 62449 0.67 0.722032
Target:  5'- aCGuCGCCgGUGGGCcGCGCGaCGGCg-- -3'
miRNA:   3'- -GC-GCGGgCGCUUGuUGUGC-GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 64220 0.67 0.760039
Target:  5'- aGCGCUguUGCuuACAGCGCGCaGCUUg -3'
miRNA:   3'- gCGCGG--GCGcuUGUUGUGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 64899 0.7 0.543847
Target:  5'- aCGCGcCCCGCGAacgcACAGCGCGUuacuGGUcuUCa -3'
miRNA:   3'- -GCGC-GGGCGCU----UGUUGUGCG----CCG--AGa -5'
5406 3' -58.9 NC_001798.1 + 69009 0.66 0.813641
Target:  5'- gGCGUCgCGCGcaucguaggcGGCGgcGCACGCGGC-Ca -3'
miRNA:   3'- gCGCGG-GCGC----------UUGU--UGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 69526 0.73 0.398379
Target:  5'- gCGUgGCCCGCGAGCu-CGCGCgGGCUg- -3'
miRNA:   3'- -GCG-CGGGCGCUUGuuGUGCG-CCGAga -5'
5406 3' -58.9 NC_001798.1 + 69951 0.67 0.768372
Target:  5'- cCGCGCCuuCGCGGcguacuuGCGACACGCccggGGUUUc -3'
miRNA:   3'- -GCGCGG--GCGCU-------UGUUGUGCG----CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 70228 0.66 0.795436
Target:  5'- aGCgaGCCgGCGGGCAGCGCGgacgagcCGGCguuUCUg -3'
miRNA:   3'- gCG--CGGgCGCUUGUUGUGC-------GCCG---AGA- -5'
5406 3' -58.9 NC_001798.1 + 71130 0.73 0.406743
Target:  5'- gCGCGCgUGCGGACGG-ACGCGGCcgUCUu -3'
miRNA:   3'- -GCGCGgGCGCUUGUUgUGCGCCG--AGA- -5'
5406 3' -58.9 NC_001798.1 + 71414 0.67 0.760039
Target:  5'- gGUGCCCGCGcgGACGccccccggcCACG-GGCUCa -3'
miRNA:   3'- gCGCGGGCGC--UUGUu--------GUGCgCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 71562 0.81 0.142453
Target:  5'- gGCGCCaGCGAGCAcacGCACggGCGGCUCUg -3'
miRNA:   3'- gCGCGGgCGCUUGU---UGUG--CGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 73324 0.66 0.78744
Target:  5'- aCGCagGCCCGCGcgccguCGACGCGCccGGCg-- -3'
miRNA:   3'- -GCG--CGGGCGCuu----GUUGUGCG--CCGaga -5'
5406 3' -58.9 NC_001798.1 + 74407 0.71 0.486661
Target:  5'- gGCGCCgGCGGACcuGACcgcCGCGGCcCUg -3'
miRNA:   3'- gCGCGGgCGCUUG--UUGu--GCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 74477 0.68 0.692722
Target:  5'- -cCGUUCGuCGAGCGGCGCGUGGCcaUCa -3'
miRNA:   3'- gcGCGGGC-GCUUGUUGUGCGCCG--AGa -5'
5406 3' -58.9 NC_001798.1 + 74750 0.66 0.805054
Target:  5'- -cCGCCCGCGaAGCccucggccccgGACGcCGCGGcCUCg -3'
miRNA:   3'- gcGCGGGCGC-UUG-----------UUGU-GCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 75931 0.67 0.754435
Target:  5'- -uCGCCCGCGGggucgacucggucucGCAGCGCGCcgGGCccCUg -3'
miRNA:   3'- gcGCGGGCGCU---------------UGUUGUGCG--CCGa-GA- -5'
5406 3' -58.9 NC_001798.1 + 76535 0.74 0.37396
Target:  5'- gGCGCUCGCGcagcagcugGACAGCgACGCGGC-CUu -3'
miRNA:   3'- gCGCGGGCGC---------UUGUUG-UGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 76727 0.69 0.603055
Target:  5'- gCGCGCCCacgcccuggagGCGAugcucaACGACGCGCGGg--- -3'
miRNA:   3'- -GCGCGGG-----------CGCU------UGUUGUGCGCCgaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.