Results 121 - 140 of 240 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5406 | 3' | -58.9 | NC_001798.1 | + | 77240 | 0.69 | 0.632021 |
Target: 5'- gGCGCCCugGCGGACGcggugucggcccuGgGCGCGGC-Cg -3' miRNA: 3'- gCGCGGG--CGCUUGU-------------UgUGCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 77484 | 0.74 | 0.343016 |
Target: 5'- cCGCgGCCCGCGcGACGAC-CGCuGCUCg -3' miRNA: 3'- -GCG-CGGGCGC-UUGUUGuGCGcCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 77695 | 0.7 | 0.573273 |
Target: 5'- gCGCGCCCG-GGGCAGCA-GCGaGCgCUg -3' miRNA: 3'- -GCGCGGGCgCUUGUUGUgCGC-CGaGA- -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 77800 | 0.68 | 0.662979 |
Target: 5'- gGCGCUgGCGGGC-ACGCaCGGCUa- -3' miRNA: 3'- gCGCGGgCGCUUGuUGUGcGCCGAga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 77856 | 0.68 | 0.662979 |
Target: 5'- gGCGCUCGCGGcCAACGCcgagGCGGUc-- -3' miRNA: 3'- gCGCGGGCGCUuGUUGUG----CGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 78134 | 0.7 | 0.593098 |
Target: 5'- gGCGCCUgGCGGACGACAUGaCGaGCg-- -3' miRNA: 3'- gCGCGGG-CGCUUGUUGUGC-GC-CGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 78818 | 0.71 | 0.486661 |
Target: 5'- gCGcCGCCCGCGGcgACGGCcccggccccugGCGCGGCa-- -3' miRNA: 3'- -GC-GCGGGCGCU--UGUUG-----------UGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 79862 | 0.69 | 0.643017 |
Target: 5'- gGCGCCU-CGAugGACGCGgCGGC-Cg -3' miRNA: 3'- gCGCGGGcGCUugUUGUGC-GCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 82171 | 0.68 | 0.672928 |
Target: 5'- aCGCGgCCGCGGuuuccgccGCAGCG-GCGGCa-- -3' miRNA: 3'- -GCGCgGGCGCU--------UGUUGUgCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 82366 | 0.69 | 0.63302 |
Target: 5'- -cCGCCgCGCGGACGcgcaucCGCGCGcGCUCg -3' miRNA: 3'- gcGCGG-GCGCUUGUu-----GUGCGC-CGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 83356 | 0.72 | 0.441271 |
Target: 5'- gCGuCGCCCGCGAACAuagGCuGCGgGGCg-- -3' miRNA: 3'- -GC-GCGGGCGCUUGU---UG-UGCgCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 83670 | 0.66 | 0.813641 |
Target: 5'- gGCGUCUgggaugcacugGCGGGCGGgACGgUGGCUCg -3' miRNA: 3'- gCGCGGG-----------CGCUUGUUgUGC-GCCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 83782 | 0.67 | 0.760039 |
Target: 5'- aGCGCCgGgGGGCccgGACGCGgGGCcCg -3' miRNA: 3'- gCGCGGgCgCUUG---UUGUGCgCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 84692 | 0.69 | 0.652008 |
Target: 5'- uCGCGCUUucggGCGAGCAgcucgccgugcacGCACGCGGUg-- -3' miRNA: 3'- -GCGCGGG----CGCUUGU-------------UGUGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 85241 | 0.68 | 0.692722 |
Target: 5'- uCGCGCCCGCccccccGCGGcCGCGCGGggCc -3' miRNA: 3'- -GCGCGGGCGcu----UGUU-GUGCGCCgaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 85502 | 0.67 | 0.760039 |
Target: 5'- gCGCGCCCcacugcgccGCGAGCAucuuCGUGGC-Cg -3' miRNA: 3'- -GCGCGGG---------CGCUUGUugu-GCGCCGaGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 86102 | 0.67 | 0.769292 |
Target: 5'- gCGCGCcgCCGCGGACGcccgccGCGCcGCGGUc-- -3' miRNA: 3'- -GCGCG--GGCGCUUGU------UGUG-CGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 86150 | 0.67 | 0.731665 |
Target: 5'- aGCGCaCCGCGGggcgcGCAugcGCgACGCGGCc-- -3' miRNA: 3'- gCGCG-GGCGCU-----UGU---UG-UGCGCCGaga -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 86722 | 0.71 | 0.495068 |
Target: 5'- cCGCGCuggccacauuuguCCGCGAGgcCGGCGCGCuGCUCa -3' miRNA: 3'- -GCGCG-------------GGCGCUU--GUUGUGCGcCGAGa -5' |
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5406 | 3' | -58.9 | NC_001798.1 | + | 87177 | 0.76 | 0.293417 |
Target: 5'- gCGUGCagCGCGGGCGACGgGCGGCUg- -3' miRNA: 3'- -GCGCGg-GCGCUUGUUGUgCGCCGAga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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