miRNA display CGI


Results 41 - 60 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 126031 0.69 0.623023
Target:  5'- cCGCGCUUaGCGAGCGccuGgACGCGGCg-- -3'
miRNA:   3'- -GCGCGGG-CGCUUGU---UgUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 124978 0.69 0.63302
Target:  5'- cCGCGugguCCC-CGAGCAGCACGgCGGC-Ca -3'
miRNA:   3'- -GCGC----GGGcGCUUGUUGUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 124870 0.68 0.672928
Target:  5'- gGCGCCUGgGGACuagaAACACGgUGGCgcgCUg -3'
miRNA:   3'- gCGCGGGCgCUUG----UUGUGC-GCCGa--GA- -5'
5406 3' -58.9 NC_001798.1 + 122830 0.69 0.623023
Target:  5'- gGCGgUCGgGGGCGGCgGCgGCGGCUCg -3'
miRNA:   3'- gCGCgGGCgCUUGUUG-UG-CGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 121975 0.69 0.603055
Target:  5'- cCGCGCgCGCcccaAGCACGCGGcCUCc -3'
miRNA:   3'- -GCGCGgGCGcuugUUGUGCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 121626 0.67 0.731665
Target:  5'- aCGCGauaCGCGGccgACGGCGCGCGcCUCa -3'
miRNA:   3'- -GCGCgg-GCGCU---UGUUGUGCGCcGAGa -5'
5406 3' -58.9 NC_001798.1 + 121561 0.71 0.524505
Target:  5'- gGgGCCCGUGGGCGACcugugccCGCGuGCUCc -3'
miRNA:   3'- gCgCGGGCGCUUGUUGu------GCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 121067 0.7 0.563417
Target:  5'- uGCGCCCGCGGGCcccgagGACGCGCacacGCa-- -3'
miRNA:   3'- gCGCGGGCGCUUG------UUGUGCGc---CGaga -5'
5406 3' -58.9 NC_001798.1 + 118989 0.74 0.37396
Target:  5'- aCGCcccugGCCCGCGAgAUAGuCGCGCGGCUg- -3'
miRNA:   3'- -GCG-----CGGGCGCU-UGUU-GUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 118680 0.72 0.45016
Target:  5'- gGCGCUCGCGGACGugGCGCacgaaucGUUCg -3'
miRNA:   3'- gCGCGGGCGCUUGUugUGCGc------CGAGa -5'
5406 3' -58.9 NC_001798.1 + 118606 0.67 0.760039
Target:  5'- uCGCGCCC-CGAu--GC-CGCGGCgCUg -3'
miRNA:   3'- -GCGCGGGcGCUuguUGuGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 118089 0.7 0.583168
Target:  5'- aGCGCCCGCGAugGggaggcccACGCGCGa---- -3'
miRNA:   3'- gCGCGGGCGCUugU--------UGUGCGCcgaga -5'
5406 3' -58.9 NC_001798.1 + 117991 0.74 0.37396
Target:  5'- aGCGCCCGcCGGGguGC-CGCGaGCUCg -3'
miRNA:   3'- gCGCGGGC-GCUUguUGuGCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 117769 0.68 0.692722
Target:  5'- uCGCGgccacggccaaCCCGUGGGCGuCGCaGCGGUUCUc -3'
miRNA:   3'- -GCGC-----------GGGCGCUUGUuGUG-CGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 117664 0.67 0.722032
Target:  5'- uGCaaCCCGCGGG-GACGCGCGGC-Cg -3'
miRNA:   3'- gCGc-GGGCGCUUgUUGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 117559 0.66 0.778428
Target:  5'- uGCGCCCagGUGccGCGGCGCGcCGGCa-- -3'
miRNA:   3'- gCGCGGG--CGCu-UGUUGUGC-GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 117083 0.71 0.534145
Target:  5'- -aCGCCCGCGAGa---GCGCGGCg-- -3'
miRNA:   3'- gcGCGGGCGCUUguugUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 116939 0.66 0.822071
Target:  5'- aCGCGCUguuUGCGGGCGccgacCACGUGGC-Ca -3'
miRNA:   3'- -GCGCGG---GCGCUUGUu----GUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 116262 0.69 0.603055
Target:  5'- uCGUGUgggaCUGCGAcggccuuauGCGACACGCGGCcCUg -3'
miRNA:   3'- -GCGCG----GGCGCU---------UGUUGUGCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 116186 0.67 0.731665
Target:  5'- cCGgGCCCG-GAGCuggGCGgGCaGGCUCa -3'
miRNA:   3'- -GCgCGGGCgCUUGu--UGUgCG-CCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.