miRNA display CGI


Results 101 - 120 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 87177 0.76 0.293417
Target:  5'- gCGUGCagCGCGGGCGACGgGCGGCUg- -3'
miRNA:   3'- -GCGCGg-GCGCUUGUUGUgCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 86722 0.71 0.495068
Target:  5'- cCGCGCuggccacauuuguCCGCGAGgcCGGCGCGCuGCUCa -3'
miRNA:   3'- -GCGCG-------------GGCGCUU--GUUGUGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 86150 0.67 0.731665
Target:  5'- aGCGCaCCGCGGggcgcGCAugcGCgACGCGGCc-- -3'
miRNA:   3'- gCGCG-GGCGCU-----UGU---UG-UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 86102 0.67 0.769292
Target:  5'- gCGCGCcgCCGCGGACGcccgccGCGCcGCGGUc-- -3'
miRNA:   3'- -GCGCG--GGCGCUUGU------UGUG-CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 85502 0.67 0.760039
Target:  5'- gCGCGCCCcacugcgccGCGAGCAucuuCGUGGC-Cg -3'
miRNA:   3'- -GCGCGGG---------CGCUUGUugu-GCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 85241 0.68 0.692722
Target:  5'- uCGCGCCCGCccccccGCGGcCGCGCGGggCc -3'
miRNA:   3'- -GCGCGGGCGcu----UGUU-GUGCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 84692 0.69 0.652008
Target:  5'- uCGCGCUUucggGCGAGCAgcucgccgugcacGCACGCGGUg-- -3'
miRNA:   3'- -GCGCGGG----CGCUUGU-------------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 83782 0.67 0.760039
Target:  5'- aGCGCCgGgGGGCccgGACGCGgGGCcCg -3'
miRNA:   3'- gCGCGGgCgCUUG---UUGUGCgCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 83670 0.66 0.813641
Target:  5'- gGCGUCUgggaugcacugGCGGGCGGgACGgUGGCUCg -3'
miRNA:   3'- gCGCGGG-----------CGCUUGUUgUGC-GCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 83356 0.72 0.441271
Target:  5'- gCGuCGCCCGCGAACAuagGCuGCGgGGCg-- -3'
miRNA:   3'- -GC-GCGGGCGCUUGU---UG-UGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 82366 0.69 0.63302
Target:  5'- -cCGCCgCGCGGACGcgcaucCGCGCGcGCUCg -3'
miRNA:   3'- gcGCGG-GCGCUUGUu-----GUGCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 82171 0.68 0.672928
Target:  5'- aCGCGgCCGCGGuuuccgccGCAGCG-GCGGCa-- -3'
miRNA:   3'- -GCGCgGGCGCU--------UGUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 79862 0.69 0.643017
Target:  5'- gGCGCCU-CGAugGACGCGgCGGC-Cg -3'
miRNA:   3'- gCGCGGGcGCUugUUGUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 78818 0.71 0.486661
Target:  5'- gCGcCGCCCGCGGcgACGGCcccggccccugGCGCGGCa-- -3'
miRNA:   3'- -GC-GCGGGCGCU--UGUUG-----------UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 78134 0.7 0.593098
Target:  5'- gGCGCCUgGCGGACGACAUGaCGaGCg-- -3'
miRNA:   3'- gCGCGGG-CGCUUGUUGUGC-GC-CGaga -5'
5406 3' -58.9 NC_001798.1 + 77856 0.68 0.662979
Target:  5'- gGCGCUCGCGGcCAACGCcgagGCGGUc-- -3'
miRNA:   3'- gCGCGGGCGCUuGUUGUG----CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 77800 0.68 0.662979
Target:  5'- gGCGCUgGCGGGC-ACGCaCGGCUa- -3'
miRNA:   3'- gCGCGGgCGCUUGuUGUGcGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 77695 0.7 0.573273
Target:  5'- gCGCGCCCG-GGGCAGCA-GCGaGCgCUg -3'
miRNA:   3'- -GCGCGGGCgCUUGUUGUgCGC-CGaGA- -5'
5406 3' -58.9 NC_001798.1 + 77484 0.74 0.343016
Target:  5'- cCGCgGCCCGCGcGACGAC-CGCuGCUCg -3'
miRNA:   3'- -GCG-CGGGCGC-UUGUUGuGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 77240 0.69 0.632021
Target:  5'- gGCGCCCugGCGGACGcggugucggcccuGgGCGCGGC-Cg -3'
miRNA:   3'- gCGCGGG--CGCUUGU-------------UgUGCGCCGaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.