miRNA display CGI


Results 61 - 80 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 27840 0.66 0.813641
Target:  5'- gCGUGCCgaGUGAACucucccgccccGACGCGCuccGGCUCc -3'
miRNA:   3'- -GCGCGGg-CGCUUG-----------UUGUGCG---CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 27254 0.66 0.813641
Target:  5'- gGCGgCCGCGGgaccGCAGCccCGUGGCg-- -3'
miRNA:   3'- gCGCgGGCGCU----UGUUGu-GCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 146509 0.66 0.805054
Target:  5'- aCGC-CCCGCGc-CGGC-CGCGGCg-- -3'
miRNA:   3'- -GCGcGGGCGCuuGUUGuGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 100181 0.66 0.805054
Target:  5'- cCGUcgGCCgGCGggUgAGCGCGCGcauGCUCg -3'
miRNA:   3'- -GCG--CGGgCGCuuG-UUGUGCGC---CGAGa -5'
5406 3' -58.9 NC_001798.1 + 90708 0.66 0.805054
Target:  5'- gGCGCUCGCaGAGau-CGCGCGGggCa -3'
miRNA:   3'- gCGCGGGCG-CUUguuGUGCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 48166 0.66 0.805054
Target:  5'- gGCGCCUgGCGGccacGCAcgcccgGCugGCGGCg-- -3'
miRNA:   3'- gCGCGGG-CGCU----UGU------UGugCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 9653 0.66 0.805054
Target:  5'- gGCGCa-GCGGGCcGCGCGCGGagggCg -3'
miRNA:   3'- gCGCGggCGCUUGuUGUGCGCCga--Ga -5'
5406 3' -58.9 NC_001798.1 + 97276 0.66 0.805054
Target:  5'- gCGCGUUCGgGGGCcacCugGCGGCgCUg -3'
miRNA:   3'- -GCGCGGGCgCUUGuu-GugCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 50667 0.66 0.805054
Target:  5'- gGgGUCCGCGuauaaaGGCAgGCGCGCGGgUCc -3'
miRNA:   3'- gCgCGGGCGC------UUGU-UGUGCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 137631 0.66 0.796318
Target:  5'- gCGCGCCCGCucGGGgGGCGCGaaGCa-- -3'
miRNA:   3'- -GCGCGGGCG--CUUgUUGUGCgcCGaga -5'
5406 3' -58.9 NC_001798.1 + 46842 0.66 0.805054
Target:  5'- cCGCcCCCGCGAAUAGCuACgGCcGCUUg -3'
miRNA:   3'- -GCGcGGGCGCUUGUUG-UG-CGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 74750 0.66 0.805054
Target:  5'- -cCGCCCGCGaAGCccucggccccgGACGcCGCGGcCUCg -3'
miRNA:   3'- gcGCGGGCGC-UUG-----------UUGU-GCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 98202 0.66 0.813641
Target:  5'- aGCGCgCCGCcuGGCGAUAuauuCGCGaGCUCa -3'
miRNA:   3'- gCGCG-GGCGc-UUGUUGU----GCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 90786 0.66 0.813641
Target:  5'- gCGUGCCguagaCGUGAacgGCGACGCGaUGGCUUc -3'
miRNA:   3'- -GCGCGG-----GCGCU---UGUUGUGC-GCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 83670 0.66 0.813641
Target:  5'- gGCGUCUgggaugcacugGCGGGCGGgACGgUGGCUCg -3'
miRNA:   3'- gCGCGGG-----------CGCUUGUUgUGC-GCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 46110 0.66 0.813641
Target:  5'- gCGUGCCCGgaGGGcCAGCGCGUaGGCa-- -3'
miRNA:   3'- -GCGCGGGCg-CUU-GUUGUGCG-CCGaga -5'
5406 3' -58.9 NC_001798.1 + 44237 0.66 0.813641
Target:  5'- uGCGCCCGaCGAcCGA-GCGCaucgauucgccgGGCUCa -3'
miRNA:   3'- gCGCGGGC-GCUuGUUgUGCG------------CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 43057 0.66 0.813641
Target:  5'- gCGCGUgagCCGCcGGCcgAGCGCGCcgGGCUCg -3'
miRNA:   3'- -GCGCG---GGCGcUUG--UUGUGCG--CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 131960 0.66 0.812789
Target:  5'- aCGUGCCCGCGGaucaucgccauggACGccaccgccaACGCGCaGCUg- -3'
miRNA:   3'- -GCGCGGGCGCU-------------UGU---------UGUGCGcCGAga -5'
5406 3' -58.9 NC_001798.1 + 26496 0.66 0.811081
Target:  5'- gCGgGCCgCGCGGggacggugcuggccGCGGCGgGCGGCg-- -3'
miRNA:   3'- -GCgCGG-GCGCU--------------UGUUGUgCGCCGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.