miRNA display CGI


Results 81 - 100 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 53242 0.66 0.796318
Target:  5'- gCGCGgCCGUGGGCGuCcUGCGGCa-- -3'
miRNA:   3'- -GCGCgGGCGCUUGUuGuGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 26032 0.66 0.796318
Target:  5'- uCGCGCgCGUGGAgGccgcGCACGCGcGC-CUg -3'
miRNA:   3'- -GCGCGgGCGCUUgU----UGUGCGC-CGaGA- -5'
5406 3' -58.9 NC_001798.1 + 129350 0.66 0.796318
Target:  5'- aGCGCCCGcCGGGC--CugGCGGggCc -3'
miRNA:   3'- gCGCGGGC-GCUUGuuGugCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 70228 0.66 0.795436
Target:  5'- aGCgaGCCgGCGGGCAGCGCGgacgagcCGGCguuUCUg -3'
miRNA:   3'- gCG--CGGgCGCUUGUUGUGC-------GCCG---AGA- -5'
5406 3' -58.9 NC_001798.1 + 24766 0.66 0.793669
Target:  5'- gCGCGCCuggcugCGCGAgcugcgguucgugcGCGACGCGCuGGUgCUg -3'
miRNA:   3'- -GCGCGG------GCGCU--------------UGUUGUGCG-CCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 73324 0.66 0.78744
Target:  5'- aCGCagGCCCGCGcgccguCGACGCGCccGGCg-- -3'
miRNA:   3'- -GCG--CGGGCGCuu----GUUGUGCG--CCGaga -5'
5406 3' -58.9 NC_001798.1 + 141563 0.66 0.78744
Target:  5'- uCGCGUUCGCGGAgGAgcUGCGGCg-- -3'
miRNA:   3'- -GCGCGGGCGCUUgUUguGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 137631 0.66 0.796318
Target:  5'- gCGCGCCCGCucGGGgGGCGCGaaGCa-- -3'
miRNA:   3'- -GCGCGGGCG--CUUgUUGUGCgcCGaga -5'
5406 3' -58.9 NC_001798.1 + 50667 0.66 0.805054
Target:  5'- gGgGUCCGCGuauaaaGGCAgGCGCGCGGgUCc -3'
miRNA:   3'- gCgCGGGCGC------UUGU-UGUGCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 97276 0.66 0.805054
Target:  5'- gCGCGUUCGgGGGCcacCugGCGGCgCUg -3'
miRNA:   3'- -GCGCGGGCgCUUGuu-GugCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 43057 0.66 0.813641
Target:  5'- gCGCGUgagCCGCcGGCcgAGCGCGCcgGGCUCg -3'
miRNA:   3'- -GCGCG---GGCGcUUG--UUGUGCG--CCGAGa -5'
5406 3' -58.9 NC_001798.1 + 131960 0.66 0.812789
Target:  5'- aCGUGCCCGCGGaucaucgccauggACGccaccgccaACGCGCaGCUg- -3'
miRNA:   3'- -GCGCGGGCGCU-------------UGU---------UGUGCGcCGAga -5'
5406 3' -58.9 NC_001798.1 + 26496 0.66 0.811081
Target:  5'- gCGgGCCgCGCGGggacggugcuggccGCGGCGgGCGGCg-- -3'
miRNA:   3'- -GCgCGG-GCGCU--------------UGUUGUgCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 74750 0.66 0.805054
Target:  5'- -cCGCCCGCGaAGCccucggccccgGACGcCGCGGcCUCg -3'
miRNA:   3'- gcGCGGGCGC-UUG-----------UUGU-GCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 46842 0.66 0.805054
Target:  5'- cCGCcCCCGCGAAUAGCuACgGCcGCUUg -3'
miRNA:   3'- -GCGcGGGCGCUUGUUG-UG-CGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 146509 0.66 0.805054
Target:  5'- aCGC-CCCGCGc-CGGC-CGCGGCg-- -3'
miRNA:   3'- -GCGcGGGCGCuuGUUGuGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 100181 0.66 0.805054
Target:  5'- cCGUcgGCCgGCGggUgAGCGCGCGcauGCUCg -3'
miRNA:   3'- -GCG--CGGgCGCuuG-UUGUGCGC---CGAGa -5'
5406 3' -58.9 NC_001798.1 + 90708 0.66 0.805054
Target:  5'- gGCGCUCGCaGAGau-CGCGCGGggCa -3'
miRNA:   3'- gCGCGGGCG-CUUguuGUGCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 48166 0.66 0.805054
Target:  5'- gGCGCCUgGCGGccacGCAcgcccgGCugGCGGCg-- -3'
miRNA:   3'- gCGCGGG-CGCU----UGU------UGugCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 9653 0.66 0.805054
Target:  5'- gGCGCa-GCGGGCcGCGCGCGGagggCg -3'
miRNA:   3'- gCGCGggCGCUUGuUGUGCGCCga--Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.