miRNA display CGI


Results 121 - 140 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 111810 0.67 0.760039
Target:  5'- uGCGCCgguCGCGGGCGuccaggggcugGCGCGgGGCg-- -3'
miRNA:   3'- gCGCGG---GCGCUUGU-----------UGUGCgCCGaga -5'
5406 3' -58.9 NC_001798.1 + 85502 0.67 0.760039
Target:  5'- gCGCGCCCcacugcgccGCGAGCAucuuCGUGGC-Cg -3'
miRNA:   3'- -GCGCGGG---------CGCUUGUugu-GCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 102533 0.66 0.778428
Target:  5'- cCGUcCCCGCGGccgGCAggccGCACGCGGUc-- -3'
miRNA:   3'- -GCGcGGGCGCU---UGU----UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 35328 0.66 0.786545
Target:  5'- gGCGCCCGCaaccgcaGAGCAcucaGCugGCGcGCc-- -3'
miRNA:   3'- gCGCGGGCG-------CUUGU----UGugCGC-CGaga -5'
5406 3' -58.9 NC_001798.1 + 95003 0.66 0.78744
Target:  5'- gGC-CCCGCaGGGCGGCGCG-GGC-CUg -3'
miRNA:   3'- gCGcGGGCG-CUUGUUGUGCgCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 97276 0.66 0.805054
Target:  5'- gCGCGUUCGgGGGCcacCugGCGGCgCUg -3'
miRNA:   3'- -GCGCGGGCgCUUGuu-GugCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 50667 0.66 0.805054
Target:  5'- gGgGUCCGCGuauaaaGGCAgGCGCGCGGgUCc -3'
miRNA:   3'- gCgCGGGCGC------UUGU-UGUGCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 137631 0.66 0.796318
Target:  5'- gCGCGCCCGCucGGGgGGCGCGaaGCa-- -3'
miRNA:   3'- -GCGCGGGCG--CUUgUUGUGCgcCGaga -5'
5406 3' -58.9 NC_001798.1 + 109456 0.66 0.796318
Target:  5'- gCGCGCCU-CGGGCAuCugGUGGC-Cg -3'
miRNA:   3'- -GCGCGGGcGCUUGUuGugCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 91570 0.66 0.796318
Target:  5'- gGUGUCCGCGGG-GGCGcCGCGGUUUc -3'
miRNA:   3'- gCGCGGGCGCUUgUUGU-GCGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 56542 0.66 0.796318
Target:  5'- gGCGCCCGCacGAugucuGgGACGCGaCGGC-Ca -3'
miRNA:   3'- gCGCGGGCG--CU-----UgUUGUGC-GCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 53242 0.66 0.796318
Target:  5'- gCGCGgCCGUGGGCGuCcUGCGGCa-- -3'
miRNA:   3'- -GCGCgGGCGCUUGUuGuGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 26032 0.66 0.796318
Target:  5'- uCGCGCgCGUGGAgGccgcGCACGCGcGC-CUg -3'
miRNA:   3'- -GCGCGgGCGCUUgU----UGUGCGC-CGaGA- -5'
5406 3' -58.9 NC_001798.1 + 129350 0.66 0.796318
Target:  5'- aGCGCCCGcCGGGC--CugGCGGggCc -3'
miRNA:   3'- gCGCGGGC-GCUUGuuGugCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 70228 0.66 0.795436
Target:  5'- aGCgaGCCgGCGGGCAGCGCGgacgagcCGGCguuUCUg -3'
miRNA:   3'- gCG--CGGgCGCUUGUUGUGC-------GCCG---AGA- -5'
5406 3' -58.9 NC_001798.1 + 24766 0.66 0.793669
Target:  5'- gCGCGCCuggcugCGCGAgcugcgguucgugcGCGACGCGCuGGUgCUg -3'
miRNA:   3'- -GCGCGG------GCGCU--------------UGUUGUGCG-CCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 73324 0.66 0.78744
Target:  5'- aCGCagGCCCGCGcgccguCGACGCGCccGGCg-- -3'
miRNA:   3'- -GCG--CGGGCGCuu----GUUGUGCG--CCGaga -5'
5406 3' -58.9 NC_001798.1 + 141563 0.66 0.78744
Target:  5'- uCGCGUUCGCGGAgGAgcUGCGGCg-- -3'
miRNA:   3'- -GCGCGGGCGCUUgUUguGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 109084 0.66 0.78744
Target:  5'- cCGaCGCCCGCcGACAACGgCuCGGCgCUg -3'
miRNA:   3'- -GC-GCGGGCGcUUGUUGU-GcGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 104113 0.66 0.78744
Target:  5'- gGCGCCCGaCGAcauaucCAcCACGCGcCUCg -3'
miRNA:   3'- gCGCGGGC-GCUu-----GUuGUGCGCcGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.