miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5409 3' -58.5 NC_001798.1 + 42159 0.66 0.788909
Target:  5'- aGGaCGCGGaucuCCcGCgGGGCCGcgGAAAAc -3'
miRNA:   3'- -UC-GCGCC----GGaCGgCCCGGCuaUUUUU- -5'
5409 3' -58.5 NC_001798.1 + 70548 0.66 0.779707
Target:  5'- cGCGCuggaGGCC-GCCGGGCUGc------ -3'
miRNA:   3'- uCGCG----CCGGaCGGCCCGGCuauuuuu -5'
5409 3' -58.5 NC_001798.1 + 67485 0.66 0.779707
Target:  5'- uGCGguaGGCC-GCgGGGCCGggGGGAu -3'
miRNA:   3'- uCGCg--CCGGaCGgCCCGGCuaUUUUu -5'
5409 3' -58.5 NC_001798.1 + 20286 0.66 0.779707
Target:  5'- uGCGCGGCCccaGgCGGGuCCGGc----- -3'
miRNA:   3'- uCGCGCCGGa--CgGCCC-GGCUauuuuu -5'
5409 3' -58.5 NC_001798.1 + 152234 0.66 0.770373
Target:  5'- cGCgGCGGCC-GCUcgGGGCCGGg----- -3'
miRNA:   3'- uCG-CGCCGGaCGG--CCCGGCUauuuuu -5'
5409 3' -58.5 NC_001798.1 + 121779 0.66 0.770373
Target:  5'- aGGCGUccucGGUCUcgggcgggGCCGGGCCGGc----- -3'
miRNA:   3'- -UCGCG----CCGGA--------CGGCCCGGCUauuuuu -5'
5409 3' -58.5 NC_001798.1 + 87726 0.66 0.770373
Target:  5'- uAGCGcCGGCCcccGCCGGcCCGAa----- -3'
miRNA:   3'- -UCGC-GCCGGa--CGGCCcGGCUauuuuu -5'
5409 3' -58.5 NC_001798.1 + 50093 0.66 0.770373
Target:  5'- -cUGCGGag-GCCGGGCUGGUGGc-- -3'
miRNA:   3'- ucGCGCCggaCGGCCCGGCUAUUuuu -5'
5409 3' -58.5 NC_001798.1 + 23584 0.66 0.770373
Target:  5'- cGGCGCcccGGCCgagcccGCCcaGGGCCGAg----- -3'
miRNA:   3'- -UCGCG---CCGGa-----CGG--CCCGGCUauuuuu -5'
5409 3' -58.5 NC_001798.1 + 26188 0.66 0.760915
Target:  5'- cGGCGCuGGacgGCCGGGCCGc------ -3'
miRNA:   3'- -UCGCG-CCggaCGGCCCGGCuauuuuu -5'
5409 3' -58.5 NC_001798.1 + 11189 0.66 0.760915
Target:  5'- gGGCG-GGCCUGCCGaacGGCCc------- -3'
miRNA:   3'- -UCGCgCCGGACGGC---CCGGcuauuuuu -5'
5409 3' -58.5 NC_001798.1 + 24667 0.66 0.760915
Target:  5'- --gGCGGCCgUGCCGgGGCUGGc----- -3'
miRNA:   3'- ucgCGCCGG-ACGGC-CCGGCUauuuuu -5'
5409 3' -58.5 NC_001798.1 + 1218 0.66 0.760915
Target:  5'- cGCGCGGCCcGC--GGCCGAc----- -3'
miRNA:   3'- uCGCGCCGGaCGgcCCGGCUauuuuu -5'
5409 3' -58.5 NC_001798.1 + 75850 0.66 0.760915
Target:  5'- aGGCGCuGGCCcaguuUGcCCGGGgCGAaGAGAu -3'
miRNA:   3'- -UCGCG-CCGG-----AC-GGCCCgGCUaUUUUu -5'
5409 3' -58.5 NC_001798.1 + 149982 0.66 0.751344
Target:  5'- gGGCGCGGCgCccgcggacGCCGGGgCGAg----- -3'
miRNA:   3'- -UCGCGCCG-Ga-------CGGCCCgGCUauuuuu -5'
5409 3' -58.5 NC_001798.1 + 135515 0.66 0.751344
Target:  5'- cGGCGCGauccaggacGCCcGCCGGGCCc------- -3'
miRNA:   3'- -UCGCGC---------CGGaCGGCCCGGcuauuuuu -5'
5409 3' -58.5 NC_001798.1 + 116426 0.66 0.751344
Target:  5'- cGCGCGGCCgacGCCGccgacgaccGGCCGc------ -3'
miRNA:   3'- uCGCGCCGGa--CGGC---------CCGGCuauuuuu -5'
5409 3' -58.5 NC_001798.1 + 56105 0.66 0.751344
Target:  5'- cGGCGUGcGCCguucgGaUCGGGCCGAg----- -3'
miRNA:   3'- -UCGCGC-CGGa----C-GGCCCGGCUauuuuu -5'
5409 3' -58.5 NC_001798.1 + 128159 0.66 0.751344
Target:  5'- uGCGCGGCCUGCUGcGCgGc------ -3'
miRNA:   3'- uCGCGCCGGACGGCcCGgCuauuuuu -5'
5409 3' -58.5 NC_001798.1 + 36150 0.66 0.751344
Target:  5'- gGGCGCGGCggcgGUCGGGgUGGgggGAGAGu -3'
miRNA:   3'- -UCGCGCCGga--CGGCCCgGCUa--UUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.