miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5409 5' -61.2 NC_001798.1 + 79607 0.66 0.730628
Target:  5'- gGCCCCgGaCGGaACGCCGCugcaguacGCGCUaugcuucccGGCc -3'
miRNA:   3'- gCGGGGgC-GCC-UGUGGUG--------UGUGA---------CCG- -5'
5409 5' -61.2 NC_001798.1 + 27214 0.66 0.730628
Target:  5'- aGCCCCCG-GGGCGggGCGCgggGgaGGCg -3'
miRNA:   3'- gCGGGGGCgCCUGUggUGUG---UgaCCG- -5'
5409 5' -61.2 NC_001798.1 + 36012 0.66 0.730628
Target:  5'- aCGCCCCC-----CACCGCGCcUUGGCu -3'
miRNA:   3'- -GCGGGGGcgccuGUGGUGUGuGACCG- -5'
5409 5' -61.2 NC_001798.1 + 72629 0.66 0.730628
Target:  5'- gCGCaCCUCGgGGuAUGCgACGaGCUGGCg -3'
miRNA:   3'- -GCG-GGGGCgCC-UGUGgUGUgUGACCG- -5'
5409 5' -61.2 NC_001798.1 + 121706 0.66 0.730628
Target:  5'- gGCUCCCGC---CGCCGCgACGgaGGCg -3'
miRNA:   3'- gCGGGGGCGccuGUGGUG-UGUgaCCG- -5'
5409 5' -61.2 NC_001798.1 + 129282 0.66 0.730628
Target:  5'- aCGUUCCUcgGCaGGCACCGCGCg--GGCg -3'
miRNA:   3'- -GCGGGGG--CGcCUGUGGUGUGugaCCG- -5'
5409 5' -61.2 NC_001798.1 + 26209 0.66 0.730628
Target:  5'- cCGCCUCgggCGCGGGCgacGCCAUgGCGCccGGCg -3'
miRNA:   3'- -GCGGGG---GCGCCUG---UGGUG-UGUGa-CCG- -5'
5409 5' -61.2 NC_001798.1 + 32869 0.66 0.730628
Target:  5'- cCGCCCCCcacCGGACcaccgGCCGagGCGCcucgggGGCa -3'
miRNA:   3'- -GCGGGGGc--GCCUG-----UGGUg-UGUGa-----CCG- -5'
5409 5' -61.2 NC_001798.1 + 39784 0.66 0.730628
Target:  5'- cCGCCugguCCCGaGGcGCgACCACACGCcGGUg -3'
miRNA:   3'- -GCGG----GGGCgCC-UG-UGGUGUGUGaCCG- -5'
5409 5' -61.2 NC_001798.1 + 44976 0.66 0.730628
Target:  5'- cCGCCCUCggagGCGGA-GCCGCggcugcaggagGCcCUGGCg -3'
miRNA:   3'- -GCGGGGG----CGCCUgUGGUG-----------UGuGACCG- -5'
5409 5' -61.2 NC_001798.1 + 150463 0.66 0.730628
Target:  5'- aCGgCCgCGCGGgggcGCGCgGCGCGCcccgacgacugUGGCa -3'
miRNA:   3'- -GCgGGgGCGCC----UGUGgUGUGUG-----------ACCG- -5'
5409 5' -61.2 NC_001798.1 + 75925 0.66 0.729685
Target:  5'- aCGCCcucgCCCGCGGGgucgacucggucuCGCaGCGCGCcgGGCc -3'
miRNA:   3'- -GCGG----GGGCGCCU-------------GUGgUGUGUGa-CCG- -5'
5409 5' -61.2 NC_001798.1 + 23867 0.66 0.729685
Target:  5'- cCGCCCCgGCcucugggGGGCGCCcgaggcggaggAgGCGCgGGCc -3'
miRNA:   3'- -GCGGGGgCG-------CCUGUGG-----------UgUGUGaCCG- -5'
5409 5' -61.2 NC_001798.1 + 97836 0.66 0.729685
Target:  5'- gCGCCCUgacggcgggCGCGGGCacggucaucgacaACCGCGcCGCcccgGGCg -3'
miRNA:   3'- -GCGGGG---------GCGCCUG-------------UGGUGU-GUGa---CCG- -5'
5409 5' -61.2 NC_001798.1 + 51973 0.66 0.729685
Target:  5'- gCGCCCCCccaccccgGCcccGACGCCGCGgucuuucgcaguuCGCUGGg -3'
miRNA:   3'- -GCGGGGG--------CGc--CUGUGGUGU-------------GUGACCg -5'
5409 5' -61.2 NC_001798.1 + 78236 0.66 0.729685
Target:  5'- aCGCCaUCCG-GGccgacguGCACCGgGCGCUcGGCg -3'
miRNA:   3'- -GCGG-GGGCgCC-------UGUGGUgUGUGA-CCG- -5'
5409 5' -61.2 NC_001798.1 + 70929 0.66 0.724959
Target:  5'- aCGaCCCCCGauCGGGgcgcgguggucccgcCGCCGC-UGCUGGCc -3'
miRNA:   3'- -GC-GGGGGC--GCCU---------------GUGGUGuGUGACCG- -5'
5409 5' -61.2 NC_001798.1 + 153064 0.66 0.721164
Target:  5'- cCGCCCCCugggGCGGGCGgaGCG-GCggGGCg -3'
miRNA:   3'- -GCGGGGG----CGCCUGUggUGUgUGa-CCG- -5'
5409 5' -61.2 NC_001798.1 + 128256 0.66 0.721164
Target:  5'- gGCCggcaugguggaCCGCGGGCucgGCCGgCACcuCUGGCg -3'
miRNA:   3'- gCGGg----------GGCGCCUG---UGGU-GUGu-GACCG- -5'
5409 5' -61.2 NC_001798.1 + 105272 0.66 0.721164
Target:  5'- cCGCCUcuucggCCGCGGcCGCCGCggucuccaGCGCcuccagGGCg -3'
miRNA:   3'- -GCGGG------GGCGCCuGUGGUG--------UGUGa-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.