miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5413 5' -63 NC_001798.1 + 135785 0.66 0.638096
Target:  5'- -gGCCCgCCgGAGGAGGCCGUgugcgcggcCCggggCgUCa -3'
miRNA:   3'- cgUGGG-GG-CUCCUCCGGCA---------GGa---GgAG- -5'
5413 5' -63 NC_001798.1 + 16219 0.66 0.638096
Target:  5'- cGCGCCgCCUGuGGgggggcggugGGGCCGgggcCCUCCcCg -3'
miRNA:   3'- -CGUGG-GGGCuCC----------UCCGGCa---GGAGGaG- -5'
5413 5' -63 NC_001798.1 + 77694 0.66 0.635177
Target:  5'- aGCGCgCCCGGGGcagcagcgagcgcuGGGCCG-CCggCgUCg -3'
miRNA:   3'- -CGUGgGGGCUCC--------------UCCGGCaGGa-GgAG- -5'
5413 5' -63 NC_001798.1 + 87987 0.66 0.634205
Target:  5'- cGCGCCuCCCG-GGGGGUCGgcaugcgacggcgUCUCC-Cg -3'
miRNA:   3'- -CGUGG-GGGCuCCUCCGGCa------------GGAGGaG- -5'
5413 5' -63 NC_001798.1 + 92695 0.66 0.632259
Target:  5'- aGgGCUUCCG-GGAGGCCGUgugcaucagcaacacCUUCCUg -3'
miRNA:   3'- -CgUGGGGGCuCCUCCGGCA---------------GGAGGAg -5'
5413 5' -63 NC_001798.1 + 86901 0.66 0.628367
Target:  5'- -aACCCCggCGuGGAGcGCCGggCCUCC-Cg -3'
miRNA:   3'- cgUGGGG--GCuCCUC-CGGCa-GGAGGaG- -5'
5413 5' -63 NC_001798.1 + 86441 0.66 0.628367
Target:  5'- gGCGCagCCCGGGGAcgggGGCCGguucgugagCCUgCUUCg -3'
miRNA:   3'- -CGUGg-GGGCUCCU----CCGGCa--------GGA-GGAG- -5'
5413 5' -63 NC_001798.1 + 124070 0.66 0.628367
Target:  5'- -gACCCCCcggGAGGAGGCgGcgCCUgCg- -3'
miRNA:   3'- cgUGGGGG---CUCCUCCGgCa-GGAgGag -5'
5413 5' -63 NC_001798.1 + 147015 0.66 0.628367
Target:  5'- -gACCCCCGGGcGGGCCGgggcuuggCCgCCg- -3'
miRNA:   3'- cgUGGGGGCUCcUCCGGCa-------GGaGGag -5'
5413 5' -63 NC_001798.1 + 84215 0.66 0.627395
Target:  5'- cGCGcCCCCCGGGGcgccgugGGGCCGguuaaaaaaCC-CCUg -3'
miRNA:   3'- -CGU-GGGGGCUCC-------UCCGGCa--------GGaGGAg -5'
5413 5' -63 NC_001798.1 + 153258 0.66 0.618642
Target:  5'- cGCGCCgCCGccGccGCC-UCCUCCUCc -3'
miRNA:   3'- -CGUGGgGGCucCucCGGcAGGAGGAG- -5'
5413 5' -63 NC_001798.1 + 23885 0.66 0.618642
Target:  5'- gGCGCCCgaggCgGAGGAGGCgCGggcCCgguucgaggCCUCg -3'
miRNA:   3'- -CGUGGG----GgCUCCUCCG-GCa--GGa--------GGAG- -5'
5413 5' -63 NC_001798.1 + 1502 0.66 0.618642
Target:  5'- cCGCgCCCGAGGcggcggcccGGCCGUCCagcgCCg- -3'
miRNA:   3'- cGUGgGGGCUCCu--------CCGGCAGGa---GGag -5'
5413 5' -63 NC_001798.1 + 110506 0.66 0.618642
Target:  5'- uCGCCCCCGGGuuucuGGCCG-CgUCCg- -3'
miRNA:   3'- cGUGGGGGCUCcu---CCGGCaGgAGGag -5'
5413 5' -63 NC_001798.1 + 24703 0.66 0.618642
Target:  5'- cGCGCCCCCGcgcccGGGGcccgcgggcgcGGCCGcCCcgCCg- -3'
miRNA:   3'- -CGUGGGGGC-----UCCU-----------CCGGCaGGa-GGag -5'
5413 5' -63 NC_001798.1 + 152509 0.66 0.599224
Target:  5'- cGCGCgCCCCGGcGGGGGCgGagggagggaaUCCcccCCUCu -3'
miRNA:   3'- -CGUG-GGGGCU-CCUCCGgC----------AGGa--GGAG- -5'
5413 5' -63 NC_001798.1 + 53221 0.66 0.589546
Target:  5'- cCACCCCgGAGGGgcuccucagcgcGGCCGUgggCgUCCUg -3'
miRNA:   3'- cGUGGGGgCUCCU------------CCGGCA---GgAGGAg -5'
5413 5' -63 NC_001798.1 + 23826 0.66 0.583751
Target:  5'- cCGCCCCCGGGGcgcgugcuguacggcGGGCUGggcgacagCCgccccggCCUCu -3'
miRNA:   3'- cGUGGGGGCUCC---------------UCCGGCa-------GGa------GGAG- -5'
5413 5' -63 NC_001798.1 + 31582 0.66 0.579895
Target:  5'- cGCGCCCCCGc-GcGGCCGUCgCcCCg- -3'
miRNA:   3'- -CGUGGGGGCucCuCCGGCAG-GaGGag -5'
5413 5' -63 NC_001798.1 + 138157 0.66 0.579895
Target:  5'- cGCGCCCCCGGguccuGGGGGCgCGaCCcgcggCCg- -3'
miRNA:   3'- -CGUGGGGGCU-----CCUCCG-GCaGGa----GGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.